6OAN
Structure of DBP in complex with human neutralizing antibody 053054
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6oana_ | All alpha proteins | Duffy binding domain-like | Duffy binding domain-like | Duffy binding domain | automated matches | (Plasmodium vivax ) [TaxId: 5855 ], | SCOPe (2.08) |
C | d6oanc_ | All alpha proteins | Duffy binding domain-like | Duffy binding domain-like | Duffy binding domain | automated matches | (Plasmodium vivax ) [TaxId: 5855 ], | SCOPe (2.08) |
B | d6oanb1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d6oand1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Duffy_binding | e6oanA2 | A: alpha bundles | X: Duffy-binding-like domain, N-terminal subdomain (From Topology) | H: Duffy-binding-like domain, N-terminal subdomain (From Topology) | T: Duffy-binding-like domain, N-terminal subdomain | F: Duffy_binding | ECOD (1.6) |
A | PTZ00176 | e6oanA1 | A: alpha bundles | X: Duffy-binding-like domain, C-terminal subdomain (From Topology) | H: Duffy-binding-like domain, C-terminal subdomain (From Topology) | T: Duffy-binding-like domain, C-terminal subdomain | F: PTZ00176 | ECOD (1.6) |
C | Duffy_binding | e6oanC2 | A: alpha bundles | X: Duffy-binding-like domain, N-terminal subdomain (From Topology) | H: Duffy-binding-like domain, N-terminal subdomain (From Topology) | T: Duffy-binding-like domain, N-terminal subdomain | F: Duffy_binding | ECOD (1.6) |
C | PTZ00176 | e6oanC1 | A: alpha bundles | X: Duffy-binding-like domain, C-terminal subdomain (From Topology) | H: Duffy-binding-like domain, C-terminal subdomain (From Topology) | T: Duffy-binding-like domain, C-terminal subdomain | F: PTZ00176 | ECOD (1.6) |
B | V-set_8 | e6oanB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B | V-set_3 | e6oanB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
D | V-set_8 | e6oanD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D | V-set_3 | e6oanD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1310.20 | Mainly Alpha | Up-down Bundle | 5 helical Cullin repeat like | Duffy-antigen binding domain | CATH (utative) |
C | 1.20.1310.20 | Mainly Alpha | Up-down Bundle | 5 helical Cullin repeat like | Duffy-antigen binding domain | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
scFv 053054 | SCFV-HEAVY-LAMBDA | Homo sapiens (human) | IGHV4-30-4*01, IGHJ5*02, IGLV3-21*02, IGLJ2*01, IGLJ3*02, IGLJ3*01 | V-DOMAIN VH, V-DOMAIN V-LAMBDA | IG | SCFV-HEAVY-LAMBDA | IMGT (202440-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05424 | Duffy binding domain (Duffy_binding) | Duffy binding domain | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Duffy binding surface protein region II | - | |||
Antibody 053054 single chain variable fragment | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR043057 | Erythrocyte binding antigen 175, C-terminal domain superfamily | Homologous Superfamily | |
IPR008602 | Duffy-antigen binding domain | Domain | |
IPR021620 | Erythrocyte binding antigen 175, C-terminal | Domain | |
IPR021015 | Duffy-antigen binding, C-terminal | Domain | |
IPR042202 | Duffy-antigen binding superfamily | Homologous Superfamily | |
IPR021032 | Duffy-antigen binding, N-terminal | Domain |