Crystal structure of apo Csm1-Csm4 cassette
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d6o73a5 | All alpha proteins | Four-helical up-and-down bundle | Helical bundle domains from Csm1/Cmr1-like | automated matches | automated matches | (Thermococcus onnurineus ) [TaxId: 342948 ], | SCOPe (2.08) |
| A | d6o73a1 | All alpha proteins | HD-domain/PDEase-like | HD-domain/PDEase-like | automated matches | automated matches | (Thermococcus onnurineus ) [TaxId: 342948 ], | SCOPe (2.08) |
| A | d6o73a2 | Alpha and beta proteins (a+b) | Ferredoxin-like | Ferredoxin-like domains from CRISPR-associated proteins | automated matches | automated matches | (Thermococcus onnurineus ) [TaxId: 342948 ], | SCOPe (2.08) |
| A | d6o73a3 | Alpha and beta proteins (a+b) | B domain from Cmr1-like | B domain from Cmr1-like | automated matches | automated matches | (Thermococcus onnurineus ) [TaxId: 342948 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Csx1_CARF | e6o73B1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: Csx1_CARF | ECOD (v295.2) |
| A | Ycf9 | e6o73A1 | A: alpha arrays | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: Ycf9 | ECOD (v295.2) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Csm4 | - | - | - | |
| Csm1 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR005510 | CRISPR type III-associated RAMP protein Csm4 | Family | |
| IPR000160 | GGDEF domain | Domain | |
| IPR013408 | CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 | Family | |
| IPR052117 | CRISPR-associated Cas10/Csm1 subtype III-A protein | Family | |
| IPR041062 | Csm1, subunit domain B | Domain | |
| IPR054767 | Cas10/Cmr2, second palm domain | Domain | |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
| IPR006674 | HD domain | Domain |