6O25
Crystal structure of 3945 Fab in complex with circumsporozoite protein NANP3 and anti-Kappa VHH domain
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07654 | e6o25A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
A | PF07686 | e6o25A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth E] | PF07654 | e6o25E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B [auth E] | PF07686 | e6o25E2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth I] | PF07654 | e6o25I1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E [auth I] | PF07686 | e6o25I2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth F] | PF07654 | e6o25F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C [auth F] | PF07686 | e6o25F2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D [auth B] | PF07654 | e6o25B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
D [auth B] | PF07686 | e6o25B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth J] | PF07654 | e6o25J1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
F [auth J] | PF07686 | e6o25J2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G [auth K] | F_UNCLASSIFIED | e6o25K1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth C] | F_UNCLASSIFIED | e6o25C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth G] | F_UNCLASSIFIED | e6o25G1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A, B [auth E], E [auth I] | Fab 3945, anti-PfCSP | VH-CH1 | Homo sapiens (human) | IGHV3-33*01, IGHV3-33*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*03, IGHG1*08, IGHG1*06 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202430-0) |
C [auth F], D [auth B], F [auth J] | Fab 3945, anti-PfCSP | L-KAPPA | Homo sapiens (human) | IGKV3-20*01, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202430-0) |
G [auth K], H [auth C], I [auth G] | VHH, anti-Kappa | VH | Lama glama (llama) | IGHV3-7*01, IGHV3-7*02, IGHV3-9*01, IGHV3-23*01, IGHV3-23*02, IGHV3-23*03, IGHV3-30*01, IGHV3-30*02, IGHV3-30*03, IGHV3-30*04, IGHV3-30*06, IGHV3-30*07, IGHV3-30*08, IGHV3-30*10, IGHV3-30*11, IGHV3-30*12, IGHV3-30*13, IGHV3-30*14, IGHV3-30*15, IGHV3-30*16, IGHV3-30*17, IGHV3-30*18, IGHV3-30*19, IGHV3-30-3*01, IGHV3-30-3*02, IGHV3-33*01, IGHV3-33*02, IGHV3-33*03, IGHV3-33*04, IGHV3-33*05, IGHV3-43*02, IGHV3-48*01, IGHV3-48*02, IGHV3-48*03, IGHV3-64*04, IGHV3-23*04, IGHV3-NL1*01, IGHV3-7*03, IGHV3-48*04, IGHV3-9*02, IGHV3-33*06, IGHV3-30-3*03, IGHV3-9*03, IGHV3-64D*06, IGHV3-23D*01, IGHV3-30-5*01, IGHV3-30-5*02, IGHV3-64*07, IGHV3-7*04, IGHV3-64D*08, IGHV3-64D*09, IGHV3-7*05 | V-DOMAIN VH | IG | VH | IMGT (202430-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A, B [auth E], E [auth I] | Heavy Chain | IGHV3 | - | circumsporozoite protein | anti-kappa vhh domain, circumsporozoite protein | SAbDab (2024-08-02) |
C [auth F], D [auth B], F [auth J] | Light Chain | IGKV3 | Kappa | circumsporozoite protein, circumsporozoite protein | anti-kappa vhh domain | SAbDab (2024-08-02) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, B [auth E], E [auth I] | 3945 Fab heavy chain | - | - | - |
C [auth F], D [auth B], F [auth J] | 3945 Kappa light chain | - | - | - |
G [auth K], H [auth C], I [auth G] | Anti-Kappa VHH domain | - | - | - |
J [auth D], K [auth H], L | Circumsporozoite protein | - |
|
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
J [auth D], K [auth H], L | IPR000884 | Thrombospondin type-1 (TSP1) repeat | Repeat |
J [auth D], K [auth H], L | IPR003067 | Plasmodium circumsporozoite protein | Family |
J [auth D], K [auth H], L | IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | Homologous Superfamily |
J [auth D], K [auth H], L | IPR051860 | Plasmodium Circumsporozoite Invasion Protein | Family |