6O1L
Architectural principles for Hfq/Crc-mediated regulation of gene expression Hfq-Crc-amiE 2:3:2 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8032703 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03372 | e6o1lA1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
B | PF03372 | e6o1lB1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
Q [auth R] | PF03372 | e6o1lR1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
C | PF17209 | e6o1lC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
D | PF17209 | e6o1lD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
E | PF17209 | e6o1lE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
F | PF17209 | e6o1lF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
G | PF17209 | e6o1lG1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
H | PF17209 | e6o1lH1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
I | PF17209 | e6o1lI1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
J | PF17209 | e6o1lJ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
K | PF17209 | e6o1lK1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
L | PF17209 | e6o1lL1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
M | PF17209 | e6o1lM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
N | PF17209 | e6o1lN1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
D | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
E | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
F | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
G | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
H | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
I | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
J | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
K | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
L | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
M | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
N | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, Q [auth R] | PF03372 | Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) | Endonuclease/Exonuclease/phosphatase family | This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling [1]. This family includes: AP endonuclease proteins EC:4.2.99.18 e.g Swiss:P27695, DNase I proteins EC:3. ... | Domain |
PF17209 | Hfq protein (Hfq) | Hfq protein | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, Q [auth R] | IPR005135 | Endonuclease/exonuclease/phosphatase | Domain |
A, B, Q [auth R] | IPR037493 | Exodeoxyribonuclease III-like | Family |
A, B, Q [auth R] | IPR004808 | AP endonuclease 1 | Family |
A, B, Q [auth R] | IPR036691 | Endonuclease/exonuclease/phosphatase superfamily | Homologous Superfamily |
IPR010920 | LSM domain superfamily | Homologous Superfamily | |
IPR005001 | RNA-binding protein Hfq | Family | |
IPR047575 | Sm domain | Domain |