6NTZ
Crystal structure of E. coli PBP5-meropenem
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6ntza2 | All beta proteins | Penicillin-binding protein associated domain | Penicillin-binding protein associated domain | automated matches | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d6ntza1 | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | beta-Lactamase/D-ala carboxypeptidase | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07943 | e6ntzA3 | A: beta sandwiches | X: Penicillin-binding protein associated domain (From Topology) | H: Penicillin-binding protein associated domain (From Topology) | T: Penicillin-binding protein associated domain | F: PF07943 | ECOD (1.6) |
A | PF00768 | e6ntzA1 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: PF00768 | ECOD (1.6) |
A | PF00768 | e6ntzA2 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: PF00768 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (utative) |
A | 2.60.410.10 | Mainly Beta | Sandwich | Peptidoglycan synthesis regulatory factor (PBP3), Domain 2 | D-Ala-D-Ala carboxypeptidase, C-terminal domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00768 | D-alanyl-D-alanine carboxypeptidase (Peptidase_S11) | D-alanyl-D-alanine carboxypeptidase | - | Domain | |
PF07943 | Penicillin-binding protein 5, C-terminal domain (PBP5_C) | Penicillin-binding protein 5, C-terminal domain | Penicillin-binding protein 5 expressed by E. coli (Swiss:P04287) functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (Pfam:PF00768) is ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012907 | Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal | Domain | |
IPR018044 | Peptidase S11, D-alanyl-D-alanine carboxypeptidase A | Family | |
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR015956 | Penicillin-binding protein, C-terminal domain superfamily | Homologous Superfamily | |
IPR037167 | D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily | Homologous Superfamily | |
IPR001967 | Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal | Domain |