Annotations: 6N1I

Cryo-EM structure of NLRC4-CARD filament

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	DEATH domain	8082304	3000069	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Hemagglutinin	e6n1iA1	A: beta barrels	X: N-cbl like	H: HTH	T: SH3	F: Hemagglutinin	ECOD (v294.2)
B	Transpeptidase	e6n1iB1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
C	Transpeptidase	e6n1iC1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
E	Transpeptidase	e6n1iE1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
F	Transpeptidase	e6n1iF1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
G	Transpeptidase	e6n1iG1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
I	Transpeptidase	e6n1iI1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
J	Transpeptidase	e6n1iJ1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
L	Transpeptidase	e6n1iL1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
M	Transpeptidase	e6n1iM1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
N	Transpeptidase	e6n1iN1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
O	Transpeptidase	e6n1iO1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
P	Transpeptidase	e6n1iP1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
K	Transpeptidase	e6n1iK1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
H	Transpeptidase	e6n1iH1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)
D	Transpeptidase	e6n1iD1	A: beta barrels	X: N-cbl like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF00619	Caspase recruitment domain (CARD)	Caspase recruitment domain	Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold .	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	NLR family CARD domain-containing protein 4	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding protein binding enzyme binding protease binding caspase binding identical protein binding protein homodimerization activity protein dimerization activity endopeptidase activator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity molecular function regulator activity peptidase activator activity endopeptidase regulator activity	regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus positive regulation of biological process response to biotic stimulus positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus positive regulation of biological process response to biotic stimulus positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of immune system process response to external biotic stimulus positive regulation of immune system process regulation of biological process positive regulation of innate immune response defense response immune response response to other organism regulation of innate immune response biological regulation defense response to symbiont response to external stimulus regulation of response to stimulus immune system process defense response to other organism positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response regulation of inflammatory response positive regulation of inflammatory response inflammatory response cellular process apoptotic process cell death programmed cell death positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cellular process detection of external biotic stimulus detection of biotic stimulus detection of bacterium detection of stimulus response to bacterium detection of other organism regulation of protein maturation positive regulation of protein maturation positive regulation of protein metabolic process positive regulation of macromolecule biosynthetic process positive regulation of protein processing protein maturation regulation of primary metabolic process positive regulation of metabolic process regulation of proteolysis positive regulation of biosynthetic process proteolysis positive regulation of macromolecule metabolic process protein metabolic process regulation of biosynthetic process regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of proteolysis regulation of protein processing protein processing metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process icosanoid metabolic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process icosanoid biosynthetic process small molecule metabolic process defense response to bacterium multicellular organismal process interleukin-1 production regulation of interleukin-1 beta production positive regulation of interleukin-1 beta production regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of interleukin-1 production regulation of interleukin-1 production interleukin-1 beta production positive regulation of multicellular organismal process positive regulation of cytokine production cellular response to stimulus pattern recognition receptor signaling pathway signaling cell communication immune response-activating signaling pathway immune response-regulating signaling pathway signal transduction innate immune response-activating signaling pathway cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis pyroptotic inflammatory response	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol canonical inflammasome complex protein-containing complex IPAF inflammasome complex cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR040535	NLRC4, helical domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR053882	Nlrc4-like, winged helix domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR007111	NACHT nucleoside triphosphatase	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR011029	Death-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001315	CARD domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR042220	NLR family CARD domain-containing protein 4	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	: Q9NPP4	periodic fever-infantile enterocolitis-autoinflammatory syndrome familial cold autoinflammatory syndrome 4 cryopyrin-associated periodic syndrome familial cold autoinflammatory syndrome enterocolitis macrophage activation syndrome periodic fever syndrome Chronic Infantile Neurological, Cutaneous, and Articular Syndrome exocrine pancreatic carcinoma gastric cancer lung adenocarcinoma malignant pancreatic neoplasm non-small cell lung carcinoma gastric carcinoma hereditary periodic fever syndrome periodic fever-infantile enterocolitis-autoinflammatory syndrome familial cold autoinflammatory syndrome 4 cryopyrin-associated periodic syndrome familial cold autoinflammatory syndrome enterocolitis macrophage activation syndrome periodic fever syndrome Chronic Infantile Neurological, Cutaneous, and Articular Syndrome exocrine pancreatic carcinoma gastric cancer lung adenocarcinoma malignant pancreatic neoplasm non-small cell lung carcinoma gastric carcinoma hereditary periodic fever syndrome lung carcinoma MALT lymphoma osteosarcoma tuberculosis hepatocellular carcinoma hereditary spastic paraplegia 4 Muckle-Wells syndrome

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.