6MZC
Human TFIID BC core
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth E] | SCOP2B Superfamily | Core histone-like | 8042407 | 3001387 | SCOP2B (2022-06-29) |
C [auth G] | SCOP2B Superfamily | Taf5 N-terminal domain-like | 8034920 | 3001495 | SCOP2B (2022-06-29) |
E [auth I] | SCOP2B Superfamily | Core histone-like | 8081687 | 3001387 | SCOP2B (2022-06-29) |
F [auth K] | SCOP2B Superfamily | Core histone-like | 8053232 | 3001387 | SCOP2B (2022-06-29) |
H [auth O] | SCOP2B Superfamily | Core histone-like | 8053233 | 3001387 | SCOP2B (2022-06-29) |
I [auth R] | SCOP2B Superfamily | Core histone-like | 8042408 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Peptidase_M1_2 | e6mzcB3 | A: beta sandwiches | X: Baculovirus p35 protein-related (From Topology) | H: Baculovirus p35 protein-related (From Topology) | T: Baculovirus p35 protein-related | F: Peptidase_M1_2 | ECOD (1.6) |
A [auth B] | CLASP_N_2 | e6mzcB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CLASP_N_2 | ECOD (1.6) |
A [auth B] | Peptidase_M1 | e6mzcB1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M1 | ECOD (1.6) |
E [auth I] | TAF | e6mzcI2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: TAF | ECOD (1.6) |
E [auth I] | TAF6_C | e6mzcI1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TAF6_C | ECOD (1.6) |
H [auth O] | TFIID_30kDa | e6mzcO1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: TFIID_30kDa | ECOD (1.6) |
I [auth R] | TFIID_20kDa | e6mzcR1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: TFIID_20kDa | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth G] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
E [auth I] | PF07571 | TAF6 C-terminal HEAT repeat domain (TAF6_C) | TAF6 C-terminal HEAT repeat domain | - | Repeat |
E [auth I] | PF02969 | TATA box binding protein associated factor (TAF) (TAF) | TATA box binding protein associated factor (TAF) | TAF proteins adopt a histone-like fold. | Domain |
F [auth K] | PF07524 | Bromodomain associated (Bromo_TP) | Bromodomain associated | This domain is predicted to bind DNA [1] and is often found associated with Pfam:PF00439 and in transcription factors. It has a histone-like fold. | Domain |
F [auth K] | PF10406 | Transcription factor TFIID complex subunit 8 C-term (TAF8_C) | Transcription factor TFIID complex subunit 8 C-term | This is the C-terminal, Delta, part of the TAF8 protein [1]. The N-terminal is generally the histone fold domain, Bromo_TP (Pfam:PF07524). TAF8 is one of the key subunits of the transcription factor for pol II, TFIID. TAF8 is one of the several gener ... | Domain |
H [auth O] | PF03540 | Transcription initiation factor TFIID 23-30kDa subunit (TFIID_30kDa) | Transcription initiation factor TFIID 23-30kDa subunit | - | Family |
I [auth R] | PF03847 | Transcription initiation factor TFIID subunit A (TFIID_20kDa) | Transcription initiation factor TFIID subunit A | - | Domain |