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 6MUT | pdb_00006mut

Cryo-EM structure of ternary Csm-crRNA-target RNA with anti-tag sequence complex in type III-A CRISPR-Cas system

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyCRISPR-associated proteins 8085899 3001554 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCRISPR-associated proteins 8085899 3001554 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyType III-A Csm2-like 8089564 3002163 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth F]AAAe6mutF1 A: alpha arraysX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: AAAECOD (v295.2)
EFlavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domaine6mutE1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domainECOD (v295.2)
DFlavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domaine6mutD1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domainECOD (v295.2)
CFlavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domaine6mutC1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domainECOD (v295.2)
BFlavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domaine6mutB1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domainECOD (v295.2)
AFlavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domaine6mutA1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domainECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.70.270 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Reverse transcriptase/Diguanylate cyclase domainCATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth F]Uncharacterized protein Csm5- - -
G [auth H]RNA (5'-R(P*CP*CP*UP*CP*UP*GP*CP*CP*CP*GP*CP*CP*UP*UP*UP*CP*CP*AP*C)-3')---
F [auth G]RNA (5'-R(*GP*UP*GP*GP*AP*AP*AP*GP*GP*CP*GP*GP*GP*CP*AP*GP*AP*GP*GP*C)-3')---
Uncharacterized protein Csm4- - -
C, D
Uncharacterized protein Csm3- - -
Uncharacterized protein Csm2- - -
Uncharacterized protein Csm1 - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth F]IPR005537CRISPR type III-associated proteinDomain
H [auth F]IPR010173CRISPR-associated protein Csm5Family
IPR005510CRISPR type III-associated RAMP protein Csm4Family
C, D
IPR052216CRISPR_Csm3_endoribonucleaseUnknown
C, D
IPR013412CRISPR-associated RAMP Csm3Family
C, D
IPR005537CRISPR type III-associated proteinDomain
IPR010149CRISPR-associated protein, Csm2 Type III-AFamily
IPR000160GGDEF domainDomain
IPR013408CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1Family
IPR052117CRISPR-associated Cas10/Csm1 subtype III-A proteinFamily
IPR041062Csm1, subunit domain BDomain
IPR054767Cas10/Cmr2, second palm domainDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR006674HD domainDomain