6M9K
Crystal structure of lambda exonuclease in complex with the Red beta C-terminal domain
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6m9ka_ | Alpha and beta proteins (a/b) | Restriction endonuclease-like | Restriction endonuclease-like | lambda exonuclease | lambda exonuclease | (Lambdavirus lambda ) [TaxId: 10710 ], | SCOPe (2.08) |
B | d6m9kb_ | Alpha and beta proteins (a/b) | Restriction endonuclease-like | Restriction endonuclease-like | lambda exonuclease | lambda exonuclease | (Lambdavirus lambda ) [TaxId: 10710 ], | SCOPe (2.08) |
C | d6m9kc_ | Alpha and beta proteins (a/b) | Restriction endonuclease-like | Restriction endonuclease-like | lambda exonuclease | lambda exonuclease | (Lambdavirus lambda ) [TaxId: 10710 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Restriction endonuclease-like | 8044442 | 3000104 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Restriction endonuclease-like | 8044442 | 3000104 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Restriction endonuclease-like | 8044442 | 3000104 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF09588 | e6m9kA1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF09588 | ECOD (1.6) |
B | PF09588 | e6m9kB1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF09588 | ECOD (1.6) |
C | PF09588 | e6m9kC1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF09588 | ECOD (1.6) |
D | F_UNCLASSIFIED | e6m9kD1 | A: a+b duplicates or obligate multimers | X: NinB (From Topology) | H: NinB (From Topology) | T: NinB | F: F_UNCLASSIFIED | ECOD (1.6) |
E | F_UNCLASSIFIED | e6m9kE1 | A: a+b duplicates or obligate multimers | X: NinB (From Topology) | H: NinB (From Topology) | T: NinB | F: F_UNCLASSIFIED | ECOD (1.6) |
F | F_UNCLASSIFIED | e6m9kF1 | A: a+b duplicates or obligate multimers | X: NinB (From Topology) | H: NinB (From Topology) | T: NinB | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
B | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
C | 3.90.320.10 | Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09588 | YqaJ-like viral recombinase domain (YqaJ) | YqaJ-like viral recombinase domain | This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR019080 | YqaJ viral recombinase | Domain | |
IPR011604 | PD-(D/E)XK endonuclease-like domain superfamily | Homologous Superfamily | |
IPR011335 | Restriction endonuclease type II-like | Homologous Superfamily | |
IPR018330 | RecT family | Family | |
IPR010183 | Bacteriophage lambda, Recombination protein bet | Family |