6LQV | pdb_00006lqv

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth Sd]SCOP2B SuperfamilyNucleic acid-binding proteins 8063430 3000135 SCOP2B (2022-06-29)
I [auth SM]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)
F [auth SH]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
E [auth SG]SCOP2B SuperfamilyRibosomal protein S7 8065993 3000799 SCOP2B (2022-06-29)
TA [auth RG]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
UA [auth RH]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
D [auth SF]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)
D [auth SF]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
D [auth SF]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
DA [auth B3]SCOP2B SuperfamilyUTPB complex component-like 8061270 3002330 SCOP2B (2022-06-29)
S [auth 3G]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
T [auth 3H]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
N [auth 3B]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
O [auth 3C]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
J [auth SR]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
K [auth SY]e6lqvSY1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
M [auth Sd]e6lqvSd1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
I [auth SM]e6lqvSM1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
H [auth SK]e6lqvSK1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
G [auth SJ]e6lqvSJ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
F [auth SH]e6lqvSH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
DB [auth RS]e6lqvRS1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
E [auth SG]e6lqvSG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
YA [auth RM]e6lqvRM1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
XA [auth RL]e6lqvRL1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
WA [auth RK]e6lqvRK1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
TA [auth RG]e6lqvRG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
UA [auth RH]e6lqvRH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
RAe6lqvRA1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
D [auth SF]e6lqvSF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
MA [auth 5G]e6lqv5G1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
LA [auth 5F]e6lqv5F1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: FAD_binding_3, Pyr_redox_3F:ECOD (20:10:01)
IA [auth 5C]e6lqv5C1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
FA [auth BE]e6lqvBE1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
DA [auth B3]e6lqvB31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
CA [auth B2]e6lqvB21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
BA [auth B1]e6lqvB11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
Z [auth AF]e6lqvAF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: FAD_binding_3, Pyr_redox_3F:ECOD (20:10:01)
X [auth A9]e6lqvA91 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: FAD_binding_3, Pyr_redox_3F:ECOD (20:10:01)
U [auth A4]e6lqvA41 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
S [auth 3G]e6lqv3G1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
T [auth 3H]e6lqv3H1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
R [auth 3F]e6lqv3F1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PDZ_2F:ECOD (20:10:01)
P [auth 3D]e6lqv3D1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
N [auth 3B]e6lqv3B1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
O [auth 3C]e6lqv3C1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
L [auth SZ]e6lqvSZ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)
J [auth SR]e6lqvSR1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Metallophos_2F:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth SM]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
I [auth SM]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
H [auth SK]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
G [auth SJ]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
F [auth SH]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
BB [auth RP]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminal- Repeat
E [auth SG]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
AB [auth RO]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
ZA [auth RN]PF04147Nop14-like family (Nop14)Nop14-like family- Family
XA [auth RL],
YA [auth RM]
PF13725Possible tRNA binding domain (tRNA_bind_2)Possible tRNA binding domain- Family
XA [auth RL],
YA [auth RM]
PF13718GNAT acetyltransferase 2 (GNAT_acetyltr_2)GNAT acetyltransferase 2- Family
XA [auth RL],
YA [auth RM]
PF05127RNA cytidine acetyltransferase NAT10/TcmA, helicase domain (NAT10_TcmA_helicase)RNA cytidine acetyltransferase NAT10/TcmA, helicase domainThis domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 ca ...This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 catalyses the formation of N4-acetylcytidine (ac4C) modification on mRNAs, 18S rRNA and tRNAs [1-4]. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble base to the active centre of the GCN5-related N-acetyltransferase (GNAT) domain [1].
Domain
WA [auth RK]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
WA [auth RK]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
VA [auth RJ]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1]. Domain
VA [auth RJ]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
TA [auth RG],
UA [auth RH]
PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
PF23098Nucleolar protein 10-like, N-terminal domain (Beta-prop_NOL10_N)Nucleolar protein 10-like, N-terminal domain- Repeat
QA [auth 5K]PF04900Fcf1 (Fcf1)Fcf1Fcf1 is a nucleolar protein involved in pre-rRNA processing [1]. Depletion of yeast Fcf1 and Fcf2 leads to a decrease in synthesis of the 18S rRNA and results in a deficit in 40S ribosomal subunits [1]. Domain
D [auth SF]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
D [auth SF]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
D [auth SF]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
D [auth SF]PF00467KOW motif (KOW)KOW motif- Family
OA [auth 5I]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
OA [auth 5I]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MA [auth 5G]PF04427Brix domain (Brix)Brix domainDomain
LA [auth 5F]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
LA [auth 5F]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
JA [auth 5D]PF03998Utp11 protein (Utp11)Utp11 protein- Family
IA [auth 5C]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domain- Repeat
IA [auth 5C]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
GA [auth B6]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Repeat
GA [auth B6]PF23240PRP39 N-terminal HAT repeat (HAT_PRP39_N)PRP39 N-terminal HAT repeat- Repeat
FA [auth BE]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Domain
FA [auth BE]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
EA [auth B8]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
DA [auth B3]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
DA [auth B3]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
CA [auth B2]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
CA [auth B2]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
BA [auth B1]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
BA [auth B1]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
AA [auth AG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Z [auth AF]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
Z [auth AF]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Y [auth AE]PF08146BP28CT (NUC211) domain (BP28CT)BP28CT (NUC211) domainThis C terminal domain is found in BAP28-like nucleolar proteins [1]. Domain
Y [auth AE]PF23243HEATR1-like, HEAT repeats (HEAT_HEATR1)HEATR1-like, HEAT repeats- Repeat
Y [auth AE]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
V [auth A5]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
U [auth A4]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
S [auth 3G],
T [auth 3H]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
R [auth 3F]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Q [auth 3E]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
Q [auth 3E]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
P [auth 3D]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
P [auth 3D]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
N [auth 3B],
O [auth 3C]
PF01269Fibrillarin (Fibrillarin)FibrillarinDomain
L [auth SZ]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
J [auth SR]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
K [auth SY]40S ribosomal protein S23-A
M [auth Sd]40S ribosomal protein S28-A
I [auth SM]40S ribosomal protein S11-A
H [auth SK]40S ribosomal protein S9-A
G [auth SJ]40S ribosomal protein S8-A
F [auth SH]40S ribosomal protein S6-A
FB [auth X1]Unassigned helices---
EB [auth RY]Protein BFR2-
DB [auth RS]Essential nuclear protein 1
CB [auth RQ]U3 small nucleolar RNA-associated protein 14
BB [auth RP]U3 small nucleolar RNA-associated protein 20
E [auth SG]40S ribosomal protein S5
AB [auth RO]Nucleolar complex protein 4-
ZA [auth RN]Nucleolar complex protein 14
XA [auth RL],
YA [auth RM]
RNA cytidine acetyltransferase
WA [auth RK]RNA 3'-terminal phosphate cyclase-like protein
VA [auth RJ]Ribosome biogenesis protein BMS1
TA [auth RG],
UA [auth RH]
Ribosomal RNA small subunit methyltransferase NEP1
SA [auth RB]U3 small nucleolar ribonucleoprotein protein LCP5-
Ribosome biogenesis protein ENP2-
QA [auth 5K]rRNA-processing protein FCF1
PA [auth 5J]rRNA-processing protein FCF2-
D [auth SF]40S ribosomal protein S4-A
OA [auth 5I]Protein SOF1
NA [auth 5H]Something about silencing protein 10
MA [auth 5G]U3 small nucleolar ribonucleoprotein protein IMP4
LA [auth 5F]U3 small nucleolar ribonucleoprotein protein IMP3
KA [auth 5E]U3 small nucleolar RNA-associated protein MPP10
JA [auth 5D]U3 small nucleolar RNA-associated protein 11-
IA [auth 5C]U3 small nucleolar RNA-associated protein 7-
HA [auth 5B]Bud site selection protein 21
GA [auth B6]U3 small nucleolar RNA-associated protein 6
FA [auth BE]U3 small nucleolar RNA-associated protein 21-
C [auth SA]18S pre-rRNA---
EA [auth B8]U3 small nucleolar RNA-associated protein 18-
DA [auth B3]U3 small nucleolar RNA-associated protein 13
CA [auth B2]U3 small nucleolar RNA-associated protein 12
BA [auth B1]Periodic tryptophan protein 2
AA [auth AG]NET1-associated nuclear protein 1
Z [auth AF]U3 small nucleolar RNA-associated protein 15
Y [auth AE]U3 small nucleolar RNA-associated protein 10
X [auth A9]U3 small nucleolar RNA-associated protein 9
W [auth A8]U3 small nucleolar RNA-associated protein 8
V [auth A5]U3 small nucleolar RNA-associated protein 5-
B [auth 5A]5' ETS---
U [auth A4]U3 small nucleolar RNA-associated protein 4-
S [auth 3G],
T [auth 3H]
13 kDa ribonucleoprotein-associated protein
R [auth 3F]Ribosomal RNA-processing protein 9
Q [auth 3E]Nucleolar protein 58
P [auth 3D]Nucleolar protein 56
N [auth 3B],
O [auth 3C]
rRNA 2'-O-methyltransferase fibrillarin
L [auth SZ]40S ribosomal protein S24-A
J [auth SR]40S ribosomal protein S16-A
A [auth 3A]U3 snoRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
K [auth SY]IPR006032Small ribosomal subunit protein uS12Family
K [auth SY]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth SY]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
M [auth Sd]IPR028626Ribosomal protein eS28 conserved siteConserved Site
M [auth Sd]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth Sd]IPR000289Small ribosomal subunit protein eS28Family
I [auth SM]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
I [auth SM]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
I [auth SM]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth SM]IPR000266Small ribosomal subunit protein uS17Family
I [auth SM]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
H [auth SK]IPR002942RNA-binding S4 domainDomain
H [auth SK]IPR022801Small ribosomal subunit protein uS4Family
H [auth SK]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
H [auth SK]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
H [auth SK]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
H [auth SK]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
G [auth SJ]IPR001047Small ribosomal subunit protein eS8Family
G [auth SJ]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
G [auth SJ]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
G [auth SJ]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
F [auth SH]IPR014401Small ribosomal subunit protein eS6-likeFamily
F [auth SH]IPR001377Small ribosomal subunit protein eS6Family
F [auth SH]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
EB [auth RY]IPR012617Apoptosis-antagonizing transcription factor, C-terminalDomain
EB [auth RY]IPR025160AATF leucine zipper-containing domainDomain
EB [auth RY]IPR039223Protein AATF/Bfr2Family
DB [auth RS]IPR007955BystinFamily
CB [auth RQ]IPR006709Small-subunit processome, Utp14Family
BB [auth RP]IPR046523U3 small nucleolar RNA-associated protein 20 domainDomain
BB [auth RP]IPR016024Armadillo-type foldHomologous Superfamily
BB [auth RP]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
BB [auth RP]IPR011989Armadillo-like helicalHomologous Superfamily
BB [auth RP]IPR057525U3 small nucleolar RNA-associated protein 20, C-terminalDomain
BB [auth RP]IPR052575Small subunit processome component 20Family
E [auth SG]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
E [auth SG]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
E [auth SG]IPR000235Small ribosomal subunit protein uS7Family
E [auth SG]IPR023798Small ribosomal subunit protein uS7 domainDomain
E [auth SG]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
AB [auth RO]IPR005612CCAAT-binding factorDomain
AB [auth RO]IPR027193Nucleolar complex protein 4-likeFamily
ZA [auth RN]IPR007276Nucleolar protein 14Family
XA [auth RL],
YA [auth RM]
IPR007807TcmA/NAT10, helicase domainDomain
XA [auth RL],
YA [auth RM]
IPR027992Possible tRNA binding domainDomain
XA [auth RL],
YA [auth RM]
IPR013562TmcA/NAT10, N-terminalDomain
XA [auth RL],
YA [auth RM]
IPR032672TmcA/NAT10/Kre33Family
XA [auth RL],
YA [auth RM]
IPR033688RNA cytidine acetyltransferase NAT10Family
XA [auth RL],
YA [auth RM]
IPR000182GNAT domainDomain
XA [auth RL],
YA [auth RM]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
WA [auth RK]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
WA [auth RK]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
WA [auth RK]IPR000228RNA 3'-terminal phosphate cyclaseFamily
WA [auth RK]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
WA [auth RK]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
WA [auth RK]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
WA [auth RK]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
WA [auth RK]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
VA [auth RJ]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
VA [auth RJ]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
VA [auth RJ]IPR003959ATPase, AAA-type, coreDomain
VA [auth RJ]IPR012948AARP2CNDomain
VA [auth RJ]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
VA [auth RJ]IPR030387Bms1/Tsr1-type G domainDomain
VA [auth RJ]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
TA [auth RG],
UA [auth RH]
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
TA [auth RG],
UA [auth RH]
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
TA [auth RG],
UA [auth RH]
IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
SA [auth RB]IPR007146Sas10/Utp3/C1DFamily
IPR001680WD40 repeatRepeat
IPR056550Nucleolar protein 10-like, second domainDomain
IPR040382Nucleolar protein 10/Enp2Family
IPR012580NUC153Domain
IPR056551Nucleolar protein 10-like, N-terminal domainDomain
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
QA [auth 5K]IPR002716PIN domainDomain
QA [auth 5K]IPR006984Fcf1/UTP23Family
QA [auth 5K]IPR029060PIN-like domain superfamilyHomologous Superfamily
QA [auth 5K]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
PA [auth 5J]IPR039883Fcf2/DNTTIP2Family
PA [auth 5J]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
D [auth SF]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
D [auth SF]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
D [auth SF]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
D [auth SF]IPR002942RNA-binding S4 domainDomain
D [auth SF]IPR013845Small ribosomal subunit protein eS4, central regionDomain
D [auth SF]IPR000876Small ribosomal subunit protein eS4Family
D [auth SF]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth SF]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
D [auth SF]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
D [auth SF]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth SF]IPR005824KOWDomain
OA [auth 5I]IPR051733WD repeat-containing DCAF13/WDSOF1Family
OA [auth 5I]IPR007287Sof1-like proteinDomain
OA [auth 5I]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
OA [auth 5I]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
OA [auth 5I]IPR001680WD40 repeatRepeat
OA [auth 5I]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
NA [auth 5H]IPR018972Sas10 C-terminal domainDomain
NA [auth 5H]IPR007146Sas10/Utp3/C1DFamily
MA [auth 5G]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
MA [auth 5G]IPR007109Brix domainDomain
LA [auth 5F]IPR002942RNA-binding S4 domainDomain
LA [auth 5F]IPR022801Small ribosomal subunit protein uS4Family
LA [auth 5F]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
LA [auth 5F]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
KA [auth 5E]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
JA [auth 5D]IPR007144Small-subunit processome, Utp11Family
IA [auth 5C]IPR019775WD40 repeat, conserved siteConserved Site
IA [auth 5C]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IA [auth 5C]IPR012952BING4, C-terminal domainDomain
IA [auth 5C]IPR001680WD40 repeatRepeat
IA [auth 5C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IA [auth 5C]IPR040315WD repeat-containing protein WDR46/Utp7Family
HA [auth 5B]IPR013268U3 small nucleolar RNA-associated protein 16Family
GA [auth B6]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
GA [auth B6]IPR055347U3 small nucleolar RNA-associated protein 6, N-terminalDomain
GA [auth B6]IPR003107HAT (Half-A-TPR) repeatRepeat
GA [auth B6]IPR013949U3 small nucleolar RNA-associated protein 6Family
FA [auth BE]IPR019775WD40 repeat, conserved siteConserved Site
FA [auth BE]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
FA [auth BE]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
FA [auth BE]IPR001680WD40 repeatRepeat
FA [auth BE]IPR007319WDR36/Utp21, C-terminal domainDomain
FA [auth BE]IPR059157WDR36/Utp21, N-terminal domainDomain
FA [auth BE]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EA [auth B8]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EA [auth B8]IPR001680WD40 repeatRepeat
EA [auth B8]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EA [auth B8]IPR045161U3 small nucleolar RNA-associated protein 18Family
DA [auth B3]IPR019775WD40 repeat, conserved siteConserved Site
DA [auth B3]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
DA [auth B3]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DA [auth B3]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
DA [auth B3]IPR001680WD40 repeatRepeat
DA [auth B3]IPR057644WD repeat-containing protein 75, second beta-propellerDomain
DA [auth B3]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CA [auth B2]IPR019775WD40 repeat, conserved siteConserved Site
CA [auth B2]IPR007148Small-subunit processome, Utp12Domain
CA [auth B2]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
CA [auth B2]IPR051570TBC1 domain family involved in cilium biogenesisFamily
CA [auth B2]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
CA [auth B2]IPR001680WD40 repeatRepeat
CA [auth B2]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BA [auth B1]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
BA [auth B1]IPR019775WD40 repeat, conserved siteConserved Site
BA [auth B1]IPR007148Small-subunit processome, Utp12Domain
BA [auth B1]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth B1]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
BA [auth B1]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
BA [auth B1]IPR001680WD40 repeatRepeat
BA [auth B1]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BA [auth B1]IPR027145Periodic tryptophan protein 2Family
AA [auth AG]IPR053826WD repeat-containing protein 75Family
AA [auth AG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth AG]IPR001680WD40 repeatRepeat
AA [auth AG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Z [auth AF]IPR019775WD40 repeat, conserved siteConserved Site
Z [auth AF]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Z [auth AF]IPR001680WD40 repeatRepeat
Z [auth AF]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
Z [auth AF]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Y [auth AE]IPR016024Armadillo-type foldHomologous Superfamily
Y [auth AE]IPR040191U3 small nucleolar RNA-associated protein 10Family
Y [auth AE]IPR021133HEAT, type 2Repeat
Y [auth AE]IPR056473Utp10/HEAT1, HEAT-repeats domainDomain
Y [auth AE]IPR011989Armadillo-like helicalHomologous Superfamily
Y [auth AE]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
Y [auth AE]IPR012954BP28, C-terminal domainDomain
X [auth A9]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth A8]IPR053881Utp8, C-terminalDomain
W [auth A8]IPR018843Utp8, beta-propellerDomain
V [auth A5]IPR052414U3 small nucleolar RNA-associated WD repeat-containing proteinFamily
V [auth A5]IPR007148Small-subunit processome, Utp12Domain
V [auth A5]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
V [auth A5]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
U [auth A4]IPR046351U3 small nucleolar RNA-associated protein 4Family
U [auth A4]IPR001680WD40 repeatRepeat
U [auth A4]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
U [auth A4]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
S [auth 3G],
T [auth 3H]
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
S [auth 3G],
T [auth 3H]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
S [auth 3G],
T [auth 3H]
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
S [auth 3G],
T [auth 3H]
IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
S [auth 3G],
T [auth 3H]
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
S [auth 3G],
T [auth 3H]
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
R [auth 3F]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
R [auth 3F]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
R [auth 3F]IPR001680WD40 repeatRepeat
R [auth 3F]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Q [auth 3E]IPR042239Nop, C-terminal domainHomologous Superfamily
Q [auth 3E]IPR012974Nucleolar protein 58/56, N-terminalDomain
Q [auth 3E]IPR002687Nop domainDomain
Q [auth 3E]IPR012976NOSICDomain
Q [auth 3E]IPR036070Nop domain superfamilyHomologous Superfamily
Q [auth 3E]IPR045056Nucleolar protein Nop56/Nop58Family
P [auth 3D]IPR042239Nop, C-terminal domainHomologous Superfamily
P [auth 3D]IPR012974Nucleolar protein 58/56, N-terminalDomain
P [auth 3D]IPR002687Nop domainDomain
P [auth 3D]IPR012976NOSICDomain
P [auth 3D]IPR036070Nop domain superfamilyHomologous Superfamily
P [auth 3D]IPR045056Nucleolar protein Nop56/Nop58Family
N [auth 3B],
O [auth 3C]
IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
N [auth 3B],
O [auth 3C]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
N [auth 3B],
O [auth 3C]
IPR020813Fibrillarin, conserved siteConserved Site
L [auth SZ]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
L [auth SZ]IPR001976Small ribosomal subunit protein eS24Family
L [auth SZ]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
L [auth SZ]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
J [auth SR]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
J [auth SR]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
J [auth SR]IPR000754Small ribosomal subunit protein uS9Family
J [auth SR]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily