6LOJ
The complex structure of IpaH9.8-LRR and hGBP1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8019668 | 3002022 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | GBP helical domain-like | 8019671 | 3001145 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | GBP helical domain-like | 8019672 | 3001145 | SCOP2B (2021-05-27) |
A | SCOP2 Family | YopM-like | 8102001 | 4003209 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | L domain-like | 8102002 | 3001010 | SCOP2 (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF02841 | e6lojB2 | A: alpha bundles | X: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology) | H: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology) | T: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | F: PF02841 | ECOD (1.6) |
B | PF02263 | e6lojB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF02263 | ECOD (1.6) |
A | PF12468 | e6lojA1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: PF12468 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02263 | Guanylate-binding protein, N-terminal domain (GBP) | Guanylate-binding protein, N-terminal domain | Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. | Domain | |
PF02841 | Guanylate-binding protein, C-terminal domain (GBP_C) | Guanylate-binding protein, C-terminal domain | Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. | Domain | |
PF12468 | Type III secretion system leucine rich repeat protein (TTSSLRR) | Type III secretion system leucine rich repeat protein | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036543 | Guanylate-binding protein, C-terminal domain superfamily | Homologous Superfamily | |
IPR015894 | Guanylate-binding protein, N-terminal | Domain | |
IPR003191 | Guanylate-binding protein/Atlastin, C-terminal | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR030386 | GB1/RHD3-type guanine nucleotide-binding (G) domain | Domain | |
IPR037684 | Guanylate-binding protein, C-terminal | Domain | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR032674 | LRR-containing bacterial E3 ligase, N-terminal | Domain | |
IPR029487 | Novel E3 ligase domain | Domain |