6LDV
Structure antibody F9 in complex with methylated peptide
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | V-set_8 | e6ldvH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
A [auth H] | C1-set_1 | e6ldvH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
B [auth L] | C1-set | e6ldvL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
B [auth L] | V-set | e6ldvL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth H] | Fab F9 | VH-CH1 | Oryctolagus cuniculus (rabbit) | IGHV1S69*01, IGHJ4*01, IGHG*01, IGHG*05, IGHG*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | IG-GAMMA-1_KAPPA | IMGT (202440-0) |
B [auth L] | Fab F9 | L-KAPPA | Oryctolagus cuniculus (rabbit) | IGKV1S2*01, IGKJ1-2*02, IGKJ1-2*01, IGKC1*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | IG-GAMMA-1_KAPPA | IMGT (202440-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth H] | Heavy Chain | IGHV1 | - | gly-m3l-gly-gly-thr-tyr-pro | SAbDab (2024-10-11) |
B [auth L] | Light Chain | IGKV1 | Kappa | gly-m3l-gly-gly-thr-tyr-pro | SAbDab (2024-10-11) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth P] | IPR017441 | Protein kinase, ATP binding site | Binding Site |
C [auth P] | IPR034879 | Mitogen-activated protein kinase kinase kinase 2/3, PB1 domain | Domain |
C [auth P] | IPR000270 | PB1 domain | Domain |
C [auth P] | IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily |
C [auth P] | IPR053793 | PB1-like domain | Domain |
C [auth P] | IPR050538 | Mitogen-activated protein kinase kinase kinase | Family |
C [auth P] | IPR000719 | Protein kinase domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
C [auth P] | M3L | Parent Component: LYS :  AA0074 :  N6,N6,N6-trimethyl-L-lysine MOD:00083 |