Annotations: 6KL5

Structure of The N-terminal domain of Middle East respiratory syndrome coronavirus Nucleocapsid Protein complexed with Benzyl 2-(Hydroxymethyl)-1-Indolinecarboxylate

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8101988	3000498	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8101988	3000498	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8101988	3000498	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8101988	3000498	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Cation_ATPase_C,Cation_ATPase_N	e6kl5D1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Class I glutamine amidotransferase-like	F: Cation_ATPase_C,Cation_ATPase_N	ECOD (v295.2)
C	Cation_ATPase_C,Cation_ATPase_N	e6kl5C1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Class I glutamine amidotransferase-like	F: Cation_ATPase_C,Cation_ATPase_N	ECOD (v295.2)
B	fn3	e6kl5B1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Class I glutamine amidotransferase-like	F: fn3	ECOD (v295.2)
A	Cation_ATPase_C,Cation_ATPase_N	e6kl5A1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Class I glutamine amidotransferase-like	F: Cation_ATPase_C,Cation_ATPase_N	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00937	Coronavirus nucleocapsid (CoV_nucleocap)	Coronavirus nucleocapsid	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Nucleoprotein	RNA binding binding nucleic acid binding	virion assembly viral RNA genome packaging viral process viral life cycle viral genome packaging RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription virion assembly viral RNA genome packaging viral process viral life cycle viral genome packaging RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	host intracellular membrane-bounded organelle host cellular component host intracellular part other organism part host cell cytoplasm part host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell Golgi apparatus viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part other organism part host cell cytoplasm part host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell Golgi apparatus viral capsid virion component protein-containing complex ribonucleoprotein complex viral nucleocapsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001218	Nucleocapsid protein, coronavirus	Family
A, B, C, D	IPR044344	Nucleocapsid (N) protein, C-terminal domain, coronavirus	Domain
A, B, C, D	IPR037195	Nucleocapsid protein, N-terminal	Homologous Superfamily
A, B, C, D	IPR037179	Nucleocapsid protein, C-terminal	Homologous Superfamily
A, B, C, D	IPR043505	Nucleocapsid protein, betacoronavirus	Family
A, B, C, D	IPR044345	Nucleocapsid (N) protein, N-terminal domain, coronavirus	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.