6KKM
Crystal structure of RbcL-Raf1 complex from Anabaena sp. PCC 7120
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | EUF07589 | e6kkmE3 | A: beta barrels | X: SH3 | H: LexA/Signal peptidase (From Topology) | T: LexA/Signal peptidase | F: EUF07589 | ECOD (1.6) |
A [auth E] | EUF07884 | e6kkmE2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: EUF07884 | ECOD (1.6) |
A [auth E] | EUF07977 | e6kkmE1 | A: alpha arrays | X: KorB C-terminal domain-like | H: Helical domain of Rubisco accumulation factor 1 (From Topology) | T: Helical domain of Rubisco accumulation factor 1 | F: EUF07977 | ECOD (1.6) |
B [auth F] | EUF07589 | e6kkmF1 | A: beta barrels | X: SH3 | H: LexA/Signal peptidase (From Topology) | T: LexA/Signal peptidase | F: EUF07589 | ECOD (1.6) |
B [auth F] | EUF07884 | e6kkmF3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: EUF07884 | ECOD (1.6) |
B [auth F] | EUF07977 | e6kkmF2 | A: alpha arrays | X: KorB C-terminal domain-like | H: Helical domain of Rubisco accumulation factor 1 (From Topology) | T: Helical domain of Rubisco accumulation factor 1 | F: EUF07977 | ECOD (1.6) |
C [auth G] | EUF07589 | e6kkmG1 | A: beta barrels | X: SH3 | H: LexA/Signal peptidase (From Topology) | T: LexA/Signal peptidase | F: EUF07589 | ECOD (1.6) |
C [auth G] | EUF07884 | e6kkmG3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: EUF07884 | ECOD (1.6) |
C [auth G] | EUF07977 | e6kkmG2 | A: alpha arrays | X: KorB C-terminal domain-like | H: Helical domain of Rubisco accumulation factor 1 (From Topology) | T: Helical domain of Rubisco accumulation factor 1 | F: EUF07977 | ECOD (1.6) |
D [auth H] | EUF07589 | e6kkmH1 | A: beta barrels | X: SH3 | H: LexA/Signal peptidase (From Topology) | T: LexA/Signal peptidase | F: EUF07589 | ECOD (1.6) |
D [auth H] | EUF07884 | e6kkmH3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: EUF07884 | ECOD (1.6) |
D [auth H] | EUF07977 | e6kkmH2 | A: alpha arrays | X: KorB C-terminal domain-like | H: Helical domain of Rubisco accumulation factor 1 (From Topology) | T: Helical domain of Rubisco accumulation factor 1 | F: EUF07977 | ECOD (1.6) |
E [auth A] | RuBisCO_large_N | e6kkmA1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
E [auth A] | RuBisCO_large | e6kkmA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
F [auth B] | RuBisCO_large_N | e6kkmB2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
F [auth B] | RuBisCO_large | e6kkmB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
G [auth C] | RuBisCO_large_N | e6kkmC1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
G [auth C] | RuBisCO_large | e6kkmC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
H [auth D] | RuBisCO_large_N | e6kkmD1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
H [auth D] | RuBisCO_large | e6kkmD2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E], B [auth F], C [auth G], D [auth H] | PF18087 | Rubisco Assembly chaperone C-terminal domain (RuBisCo_chap_C) | Rubisco Assembly chaperone C-terminal domain | This is the C-terminal domain, also known as the beta domain, of Rubsico Assembly Chaperone protein (Raf1). Raf1 is necessary for rubisco to catalyze the rate-limiting step of carbon fixation through carboxylating the five-carbon sugar substrate rib ... | Domain |
A [auth E], B [auth F], C [auth G], D [auth H] | PF18579 | Rubisco accumulation factor 1 helix turn helix domain (Raf1_HTH) | Rubisco accumulation factor 1 helix turn helix domain | This is helix turn helix domain found in alpha helical region of Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates di ... | Domain |
A [auth E], B [auth F], C [auth G], D [auth H] | PF18578 | Rubisco accumulation factor 1 alpha helical domain (Raf1_N) | Rubisco accumulation factor 1 alpha helical domain | This is the N-terminal alpha helical domain found in Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. ... | Domain |
E [auth A], F [auth B], G [auth C], H [auth D] | PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain |
E [auth A], F [auth B], G [auth C], H [auth D] | PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain |