Crystal structure of yedK with ssDNA containing an abasic site
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A [auth B] | SCOP2B Superfamily | BB1717-like | 8059018 | 3000864 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth B] | ATP-synt | e6kcqB1 | A: beta barrels | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: ATP-synt | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A [auth B] | 3.90.1680.10 | Alpha Beta | Alpha-Beta Complex | hypothetical protein yedk fold | SOS response associated peptidase-like | CATH (utative) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth B] | IPR003738 | SOS response associated peptidase (SRAP) | Family |
| A [auth B] | IPR036590 | SOS response associated peptidase-like | Homologous Superfamily |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| B [auth A] | PED | :  AA0494 :  N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-prolinium MOD:01454 |














