6K78
Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6k78a1 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Actin-like ATPase domain | automated matches | automated matches | (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], | SCOPe (2.08) |
C | d6k78c1 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Actin-like ATPase domain | automated matches | automated matches | (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], | SCOPe (2.08) |
B | d6k78b1 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Actin-like ATPase domain | automated matches | automated matches | (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], | SCOPe (2.08) |
D | d6k78d1 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Actin-like ATPase domain | automated matches | automated matches | (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | FGGY_C | e6k78A2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: FGGY_C | ECOD (1.6) |
A | FGGY_N | e6k78A1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: FGGY_N | ECOD (1.6) |
C | FGGY_C | e6k78C2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: FGGY_C | ECOD (1.6) |
C | FGGY_N | e6k78C1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: FGGY_N | ECOD (1.6) |
B | FGGY_C | e6k78B2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: FGGY_C | ECOD (1.6) |
B | FGGY_N | e6k78B1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: FGGY_N | ECOD (1.6) |
D | FGGY_C | e6k78D1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: FGGY_C | ECOD (1.6) |
D | FGGY_N | e6k78D2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: FGGY_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 3.30.420.40 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (utative) |
B | 3.30.420.40 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00370 | FGGY family of carbohydrate kinases, N-terminal domain (FGGY_N) | FGGY family of carbohydrate kinases, N-terminal domain | This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. | Domain | |
PF02782 | FGGY family of carbohydrate kinases, C-terminal domain (FGGY_C) | FGGY family of carbohydrate kinases, C-terminal domain | This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain. | Domain | |
PF00370 | FGGY family of carbohydrate kinases, N-terminal domain (FGGY_N) | FGGY family of carbohydrate kinases, N-terminal domain | This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. | Domain | |
PF02782 | FGGY family of carbohydrate kinases, C-terminal domain (FGGY_C) | FGGY family of carbohydrate kinases, C-terminal domain | This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018485 | Carbohydrate kinase FGGY, C-terminal | Domain | |
IPR005999 | Glycerol kinase | Family | |
IPR018483 | Carbohydrate kinase, FGGY, conserved site | Conserved Site | |
IPR043129 | ATPase, nucleotide binding domain | Homologous Superfamily | |
IPR000577 | Carbohydrate kinase, FGGY | Family | |
IPR018484 | Carbohydrate kinase FGGY, N-terminal | Domain | |
IPR018485 | Carbohydrate kinase FGGY, C-terminal | Domain | |
IPR005999 | Glycerol kinase | Family | |
IPR018483 | Carbohydrate kinase, FGGY, conserved site | Conserved Site | |
IPR043129 | ATPase, nucleotide binding domain | Homologous Superfamily | |
IPR000577 | Carbohydrate kinase, FGGY | Family | |
IPR018484 | Carbohydrate kinase FGGY, N-terminal | Domain |