6K61
Cryo-EM structure of the tetrameric photosystem I from a heterocyst-forming cyanobacterium Anabaena sp. PCC7120
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094435 | 3000850 | SCOP2B (2022-06-29) |
M [auth a] | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8094434 | 4002118 | SCOP2 (2022-06-29) |
M [auth a] | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8094435 | 3000850 | SCOP2 (2022-06-29) |
K [auth L] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8095527 | 3000870 | SCOP2B (2022-06-29) |
W [auth l] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8095527 | 3000870 | SCOP2B (2022-06-29) |
L [auth M] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8094801 | 3000829 | SCOP2B (2022-06-29) |
X [auth m] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8094801 | 3000829 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094389 | 3000850 | SCOP2B (2022-06-29) |
O [auth b] | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8094388 | 4002118 | SCOP2 (2022-06-29) |
O [auth b] | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8094389 | 3000850 | SCOP2 (2022-06-29) |
D [auth C] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093786 | 3000020 | SCOP2B (2022-06-29) |
P [auth c] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093786 | 3000020 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8094737 | 3000951 | SCOP2B (2022-06-29) |
Q [auth d] | SCOP2 Family | Photosystem I subunit PsaD | 8094736 | 4003498 | SCOP2 (2022-06-29) |
Q [auth d] | SCOP2 Superfamily | Photosystem I subunit PsaD | 8094737 | 3000951 | SCOP2 (2022-06-29) |
R [auth e] | SCOP2B Superfamily | Electron transport accessory proteins | 8093812 | 3000325 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Electron transport accessory proteins | 8093812 | 3000325 | SCOP2B (2022-06-29) |
G [auth F] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8094713 | 3000813 | SCOP2B (2022-06-29) |
S [auth f] | SCOP2 Family | Subunit III of photosystem I reaction centre, PsaF | 8094712 | 4002091 | SCOP2 (2022-06-29) |
S [auth f] | SCOP2 Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8094713 | 3000813 | SCOP2 (2022-06-29) |
H [auth J] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8094669 | 3000824 | SCOP2B (2022-06-29) |
T [auth j] | SCOP2 Family | Subunit IX of photosystem I reaction centre, PsaJ | 8094668 | 4002101 | SCOP2 (2022-06-29) |
T [auth j] | SCOP2 Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8094669 | 3000824 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PsaA_PsaB_C | e6k61A1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
A | PsaA_PsaB_N | e6k61A2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
M [auth a] | PsaA_PsaB_C | e6k61a1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
M [auth a] | PsaA_PsaB_N | e6k61a2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
J [auth I] | PSI_8 | e6k61I1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
V [auth i] | PSI_8 | e6k61i1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
K [auth L] | PsaL | e6k61L1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
W [auth l] | PsaL | e6k61l1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
L [auth M] | PsaM | e6k61M1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
X [auth m] | PsaM | e6k61m1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
B [auth X] | PsaX | e6k61X1 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PsaX | ECOD (1.6) |
N [auth x] | PsaX | e6k61x1 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PsaX | ECOD (1.6) |
C [auth B] | PsaA_PsaB_C | e6k61B2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
C [auth B] | PsaA_PsaB_N | e6k61B1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
O [auth b] | PsaA_PsaB_C | e6k61b1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
O [auth b] | PsaA_PsaB_N | e6k61b2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
D [auth C] | Fer4_21_1 | e6k61C1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
P [auth c] | Fer4_21_1 | e6k61c1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
E [auth D] | PsaD | e6k61D1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
Q [auth d] | PsaD | e6k61d1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
R [auth e] | PSI_PsaE | e6k61e1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
F [auth E] | PSI_PsaE | e6k61E1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
G [auth F] | PSI_PsaF | e6k61F1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
S [auth f] | PSI_PsaF | e6k61f1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
H [auth J] | PSI_PsaJ | e6k61J1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
T [auth j] | PSI_PsaJ | e6k61j1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
I [auth K] | PSI_PSAK | e6k61K1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PSI_PSAK | ECOD (1.6) |
U [auth k] | PSI_PSAK | e6k61k1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PSI_PSAK | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, M [auth a] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
J [auth I], V [auth i] | PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
K [auth L], W [auth l] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
L [auth M], X [auth m] | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
C [auth B], O [auth b] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
D [auth C], P [auth c] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
E [auth D], Q [auth d] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
F [auth E], R [auth e] | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
G [auth F], S [auth f] | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
H [auth J], T [auth j] | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
I [auth K], U [auth k] | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |