6JWI
Yeast Npl4 in complex with Lys48-linked diubiquitin
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth I] | d6jwii_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
D [auth G] | d6jwig_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth I] | PF00240 | e6jwiI1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
D [auth G] | PF00240 | e6jwiG1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
B [auth A] | PF05021 | e6jwiA2 | A: alpha arrays | X: C-terminal domain of Npl4 (From Topology) | H: C-terminal domain of Npl4 (From Topology) | T: C-terminal domain of Npl4 | F: PF05021 | ECOD (1.6) |
B [auth A] | PF05021 | e6jwiA3 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF05021 | ECOD (1.6) |
B [auth A] | PF05020 | e6jwiA4 | A: few secondary structure elements | X: Npl4 zinc binding domain (From Topology) | H: Npl4 zinc binding domain (From Topology) | T: Npl4 zinc binding domain | F: PF05020 | ECOD (1.6) |
C [auth E] | PF05021 | e6jwiE1 | A: alpha arrays | X: C-terminal domain of Npl4 (From Topology) | H: C-terminal domain of Npl4 (From Topology) | T: C-terminal domain of Npl4 | F: PF05021 | ECOD (1.6) |
C [auth E] | PF05021 | e6jwiE2 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF05021 | ECOD (1.6) |
C [auth E] | PF05020 | e6jwiE3 | A: few secondary structure elements | X: Npl4 zinc binding domain (From Topology) | H: Npl4 zinc binding domain (From Topology) | T: Npl4 zinc binding domain | F: PF05020 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth I], D [auth G] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
B [auth A], C [auth E] | PF05020 | NPL4 family, putative zinc binding region (zf-NPL4) | NPL4 family, putative zinc binding region | - | Family |
B [auth A], C [auth E] | PF05021 | NPL4 family (NPL4) | NPL4 family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth I], D [auth G] | IPR019954 | Ubiquitin conserved site | Conserved Site |
A [auth I], D [auth G] | IPR038587 | Large ribosomal subunit protein eL40 superfamily | Homologous Superfamily |
A [auth I], D [auth G] | IPR000626 | Ubiquitin-like domain | Domain |
A [auth I], D [auth G] | IPR019956 | Ubiquitin domain | Domain |
A [auth I], D [auth G] | IPR001975 | Large ribosomal subunit protein eL40 domain | Domain |
A [auth I], D [auth G] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
B [auth A], C [auth E] | IPR007716 | NPL4, zinc-binding putative | Domain |
B [auth A], C [auth E] | IPR007717 | Nuclear pore localisation protein NPL4, C-terminal | Domain |
B [auth A], C [auth E] | IPR016563 | Nuclear protein localization protein 4 | Family |
B [auth A], C [auth E] | IPR037518 | MPN domain | Domain |
B [auth A], C [auth E] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |