The crystal of nucleoside diphosphate kinase from Aspergillus flavus


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
X [auth T]d6joht_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
W [auth S]d6johs_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
V [auth P]d6johp_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
U [auth O]d6joho_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
T [auth X]d6johx_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
S [auth W]d6johw_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
R [auth V]d6johv_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Q [auth U]d6johu_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
P [auth R]d6johr_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
O [auth Q]d6johq_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Nd6john_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Md6johm_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Ld6johl_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Kd6johk_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Jd6johj_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Id6johi_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Hd6johh_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Gd6johg_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Fd6johf_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Ed6johe_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Dd6johd_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Cd6johc_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Bd6johb_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)
Ad6joha_ Alpha and beta proteins (a+b) Ferredoxin-like Nucleoside diphosphate kinase, NDK automated matches automated matches (Aspergillus flavus NRRL3357 ) [TaxId: 332952 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
X [auth T]SCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
W [auth S]SCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
V [auth P]SCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
U [auth O]SCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
T [auth X]SCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
S [auth W]SCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
R [auth V]SCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
Q [auth U]SCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
P [auth R]SCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
O [auth Q]SCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyNucleoside diphosphate kinase, NDK 8094719 3001175 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
X [auth T]Cytochrome_C554e6johT1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
W [auth S]Cytochrome_C554e6johS1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
V [auth P]Cytochrome_C554e6johP1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
U [auth O]Cytochrome_C554e6johO1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
T [auth X]Cytochrome_C554e6johX1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
S [auth W]Cytochrome_C554e6johW1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
R [auth V]Cytochrome_C554e6johV1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
Q [auth U]Cytochrome_C554e6johU1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
P [auth R]Cytochrome_C554e6johR1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
O [auth Q]Cytochrome_C554e6johQ1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
NCytochrome_C554e6johN1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
MCytochrome_C554e6johM1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
LCytochrome_C554e6johL1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
KCytochrome_C554e6johK1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
JCytochrome_C554e6johJ1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
ICytochrome_C554e6johI1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
HCytochrome_C554e6johH1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
GCytochrome_C554e6johG1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
FCytochrome_C554e6johF1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
ECytochrome_C554e6johE1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
DCytochrome_C554e6johD1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
CCytochrome_C554e6johC1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)
BCopper-binde6johB1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Copper-bindECOD (v294.2)
ACytochrome_C554e6johA1 A: beta barrelsX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
X [auth T]3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
W [auth S]3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
V [auth P]3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
U [auth O]3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
T [auth X]3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
S [auth W]3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
R [auth V]3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
Q [auth U]3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
P [auth R]3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
O [auth Q]3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
N3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
M3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
L3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
K3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
J3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
I3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
H3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
G3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
F3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
E3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
D3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
C3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
B3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)
A3.30.70.141 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Nucleoside diphosphate kinase-like domainCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B,
C,
D,
E,
PF00334Nucleoside diphosphate kinase (NDK)Nucleoside diphosphate kinaseDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B,
C,
D,
E,
Nucleoside diphosphate kinase -