Annotations: 6JNF

Cryo-EM structure of the translocator of the outer mitochondrial membrane

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Ribosomal_S20p	e6jnfF1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Ribosomal_S20p	ECOD (v294.2)
A	Ribosomal_S20p	e6jnfA1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Ribosomal_S20p	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, F	PF01459	Eukaryotic porin (Porin_3)	Eukaryotic porin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, F	Mitochondrial import receptor subunit TOM40	wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity macromolecule transmembrane transporter activity protein transporter activity transmembrane protein transporter activity	localization transport monoatomic ion transport establishment of localization establishment of protein localization cellular localization protein insertion into mitochondrial membrane outer mitochondrial membrane organization mitochondrial membrane organization cellular component organization establishment of localization in cell cellular component organization or biogenesis intracellular protein localization protein insertion into membrane localization transport monoatomic ion transport establishment of localization establishment of protein localization cellular localization protein insertion into mitochondrial membrane outer mitochondrial membrane organization mitochondrial membrane organization cellular component organization establishment of localization in cell cellular component organization or biogenesis intracellular protein localization protein insertion into membrane mitochondrion organization membrane organization establishment of protein localization to membrane protein insertion into mitochondrial outer membrane localization within membrane organelle organization establishment of protein localization to organelle protein localization to organelle macromolecule localization protein localization to mitochondrion cellular process protein import into mitochondrial matrix transmembrane transport intercellular transport protein transmembrane transport protein transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial protein-containing complex protein-containing complex mitochondrial membrane outer mitochondrial membrane protein complex membrane membrane protein complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial protein-containing complex protein-containing complex mitochondrial membrane outer mitochondrial membrane protein complex membrane membrane protein complex organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane mitochondrial outer membrane translocase complex outer membrane organelle membrane cytosol pore complex mitochondrial intermembrane space membrane-enclosed lumen intracellular organelle lumen organelle envelope lumen organelle lumen
B, G	Mitochondrial import receptor subunit TOM7	-	establishment of protein localization cellular localization protein insertion into mitochondrial membrane outer mitochondrial membrane organization mitochondrial membrane organization cellular component organization localization establishment of localization in cell cellular component organization or biogenesis intracellular protein localization protein insertion into membrane mitochondrion organization membrane organization establishment of protein localization to membrane establishment of protein localization cellular localization protein insertion into mitochondrial membrane outer mitochondrial membrane organization mitochondrial membrane organization cellular component organization localization establishment of localization in cell cellular component organization or biogenesis intracellular protein localization protein insertion into membrane mitochondrion organization membrane organization establishment of protein localization to membrane protein insertion into mitochondrial outer membrane localization within membrane establishment of localization organelle organization establishment of protein localization to organelle protein localization to organelle macromolecule localization protein localization to mitochondrion cellular process transport protein import into mitochondrial matrix transmembrane transport intercellular transport protein transmembrane transport protein transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane mitochondrial protein-containing complex protein-containing complex outer mitochondrial membrane protein complex membrane protein complex mitochondrial outer membrane translocase complex
C, H	Mitochondrial import receptor subunit TOM22	-	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport protein insertion into mitochondrial membrane outer mitochondrial membrane organization cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport protein insertion into mitochondrial membrane outer mitochondrial membrane organization mitochondrial membrane organization cellular component organization cellular component organization or biogenesis protein insertion into membrane mitochondrion organization membrane organization establishment of protein localization to membrane protein insertion into mitochondrial outer membrane localization within membrane organelle organization establishment of protein localization to organelle protein localization to organelle protein localization to mitochondrion protein import into mitochondrial matrix transmembrane transport intercellular transport protein transmembrane transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane mitochondrial protein-containing complex protein-containing complex outer mitochondrial membrane protein complex membrane protein complex mitochondrial outer membrane translocase complex
D, I	Mitochondrial import receptor subunit TOM5	-	establishment of protein localization cellular localization protein insertion into mitochondrial membrane outer mitochondrial membrane organization mitochondrial membrane organization cellular component organization localization establishment of localization in cell cellular component organization or biogenesis intracellular protein localization protein insertion into membrane mitochondrion organization membrane organization establishment of protein localization to membrane establishment of protein localization cellular localization protein insertion into mitochondrial membrane outer mitochondrial membrane organization mitochondrial membrane organization cellular component organization localization establishment of localization in cell cellular component organization or biogenesis intracellular protein localization protein insertion into membrane mitochondrion organization membrane organization establishment of protein localization to membrane protein insertion into mitochondrial outer membrane localization within membrane establishment of localization organelle organization establishment of protein localization to organelle protein localization to organelle macromolecule localization protein localization to mitochondrion cellular process transmembrane transport protein transmembrane transport transport protein transport protein-containing complex organization cellular component biogenesis cellular component assembly protein-containing complex assembly mitochondrial outer membrane translocase complex assembly	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane mitochondrial protein-containing complex protein-containing complex outer mitochondrial membrane protein complex membrane protein complex mitochondrial outer membrane translocase complex
E, J	Mitochondrial import receptor subunit TOM6	-	establishment of protein localization cellular localization protein insertion into mitochondrial membrane outer mitochondrial membrane organization mitochondrial membrane organization cellular component organization localization establishment of localization in cell cellular component organization or biogenesis intracellular protein localization protein insertion into membrane mitochondrion organization membrane organization establishment of protein localization to membrane establishment of protein localization cellular localization protein insertion into mitochondrial membrane outer mitochondrial membrane organization mitochondrial membrane organization cellular component organization localization establishment of localization in cell cellular component organization or biogenesis intracellular protein localization protein insertion into membrane mitochondrion organization membrane organization establishment of protein localization to membrane protein insertion into mitochondrial outer membrane localization within membrane establishment of localization organelle organization establishment of protein localization to organelle protein localization to organelle macromolecule localization protein localization to mitochondrion cellular process transport protein import into mitochondrial matrix transmembrane transport intercellular transport protein transmembrane transport protein transport protein-containing complex organization cellular component biogenesis cellular component assembly protein-containing complex assembly mitochondrial outer membrane translocase complex assembly	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane mitochondrial protein-containing complex protein-containing complex outer mitochondrial membrane protein complex membrane protein complex mitochondrial outer membrane translocase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, F	IPR005686	Mitochondrial import receptor subunit Tom40, fungi	Family
A, F	IPR023614	Porin domain superfamily	Homologous Superfamily
A, F	IPR037930	Tom40	Family
A, F	IPR027246	Eukaryotic porin/Tom40	Family
B, G	IPR012621	Mitochondrial import receptor subunit TOM7	Family
C, H	IPR005683	Mitochondrial import receptor subunit Tom22	Family
C, H	IPR020951	Mitochondrial import receptor subunit Tom22, fungi	Family
D, I	IPR019603	Mitochondrial outer membrane translocase complex, subunit Tom5	Family
E, J	IPR020266	Mitochondrial import receptor subunit Tom6	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	OPM	Transmembrane	Beta-barrel transmembrane	Mitochondrial and plastid porins	Tom40 family (n=19,S=20)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Mitochondrial Outer Membrane Beta Barrel Proteins	translocase of the outer mitochondrial membrane (TOM) complex

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.