6JIM
Viral helicase protein
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UNK_F_TYPE | e6jimA1 | A: a+b complex topology | X: Tomato mosaic virus helicase N-terminal domain (From Topology) | H: Tomato mosaic virus helicase N-terminal domain (From Topology) | T: Tomato mosaic virus helicase N-terminal domain | F: UNK_F_TYPE | ECOD (1.6) |
A | Viral_helicase1 | e6jimA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Viral_helicase1 | ECOD (1.6) |
A | UNK_F_TYPE | e6jimA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UNK_F_TYPE | ECOD (1.6) |
B | UNK_F_TYPE | e6jimB3 | A: a+b complex topology | X: Tomato mosaic virus helicase N-terminal domain (From Topology) | H: Tomato mosaic virus helicase N-terminal domain (From Topology) | T: Tomato mosaic virus helicase N-terminal domain | F: UNK_F_TYPE | ECOD (1.6) |
B | Viral_helicase1 | e6jimB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Viral_helicase1 | ECOD (1.6) |
B | UNK_F_TYPE | e6jimB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UNK_F_TYPE | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20896 | Tomato mosaic virus helicase, N-terminal domain (ToMV_Hel_N) | Tomato mosaic virus helicase, N-terminal domain | Tomato mosaic virus (ToMV) generates two large replication proteins in the host cell. The smaller one contains the methyltransferase domain and the helicase domain (Hel). This core helicase domain consists of two RecA domains and an N-terminal access ... | Domain | |
PF01443 | Viral (Superfamily 1) RNA helicase (Viral_helicase1) | Viral (Superfamily 1) RNA helicase | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR047311 | RNA-dependent RNA polymerase, togavirus | Domain | |
IPR048891 | Non-structural protein 3, zinc-binding domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR002589 | Macro domain | Domain | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR002620 | Alphavirus nsp2 protease domain | Domain | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR001788 | RNA-dependent RNA polymerase, alsuviricetes | Domain | |
IPR002588 | Alphavirus-like methyltransferase domain | Domain | |
IPR043472 | Macro domain-like | Homologous Superfamily | |
IPR044936 | Alphavirus nsP2 protease domain superfamily | Homologous Superfamily | |
IPR049329 | Tomato mosaic virus helicase, N-terminal domain | Domain | |
IPR044371 | Non-structural protein 3, X-domain-like | Domain | |
IPR027351 | (+) RNA virus helicase core domain | Domain | |
IPR007094 | RNA-directed RNA polymerase, catalytic domain | Domain |