6JI2
Crystal structure of archaeal ribosomal protein aP1, aPelota, and GTP-bound aEF1A complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056523 | 3002024 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056521 | 3002024 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056520 | 3002022 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056520 | 3002022 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056523 | 3002024 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056521 | 3002024 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GTP_EFTU_D2_1 | e6ji2A2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2_1 | ECOD (1.6) |
A | GTP_EFTU_D3_1 | e6ji2A1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: GTP_EFTU_D3_1 | ECOD (1.6) |
A | MnmE_helical_2nd | e6ji2A3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
C [auth E] | GTP_EFTU_D2_1 | e6ji2E2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2_1 | ECOD (1.6) |
C [auth E] | GTP_EFTU_D3_1 | e6ji2E1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: GTP_EFTU_D3_1 | ECOD (1.6) |
C [auth E] | MnmE_helical_2nd | e6ji2E3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
B | eRF1_1 | e6ji2B2 | A: beta barrels | X: SH3 | H: Dom34/Pelota N-terminal domain-like (From Topology) | T: Dom34/Pelota N-terminal domain-like | F: eRF1_1 | ECOD (1.6) |
B | eRF1_3 | e6ji2B3 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: eRF1_3 | ECOD (1.6) |
B | eRF1_2 | e6ji2B1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: eRF1_2 | ECOD (1.6) |
D [auth F] | eRF1_1 | e6ji2F3 | A: beta barrels | X: SH3 | H: Dom34/Pelota N-terminal domain-like (From Topology) | T: Dom34/Pelota N-terminal domain-like | F: eRF1_1 | ECOD (1.6) |
D [auth F] | eRF1_3 | e6ji2F2 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: eRF1_3 | ECOD (1.6) |
D [auth F] | eRF1_2 | e6ji2F1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: eRF1_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth E] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
A, C [auth E] | PF22594 | GTP-eEF1A C-terminal domain-like (GTP-eEF1A_C) | GTP-eEF1A C-terminal domain-like | This entry represents a beta-barrel domain that is found C-terminal in homologues of elongation factor eEF1A. | Domain |
A, C [auth E] | PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain |
B, D [auth F] | PF03465 | eRF1 domain 3 (eRF1_3) | eRF1 domain 3 | The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The o ... | Domain |
B, D [auth F] | PF03463 | eRF1 domain 1 (eRF1_1) | eRF1 domain 1 | The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The o ... | Domain |