Annotations: 6JDE

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	UNK_F_TYPE	e6jdeB4	A: a+b complex topology	X: C-terminal domain of DNA repair helicase RadD (From Topology)	H: C-terminal domain of DNA repair helicase RadD (From Topology)	T: C-terminal domain of DNA repair helicase RadD	F: UNK_F_TYPE	ECOD (1.6)
A [auth B]	DEAD_1	e6jdeB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DEAD_1	ECOD (1.6)
A [auth B]	Helicase_C_1	e6jdeB2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Helicase_C_1	ECOD (1.6)
A [auth B]	UNK_F_TYPE	e6jdeB3	A: few secondary structure elements	X: Rubredoxin-like	H: Zinc finger domain of DNA repair helicase RadD (From Topology)	T: Zinc finger domain of DNA repair helicase RadD	F: UNK_F_TYPE	ECOD (1.6)
B [auth A]	UNK_F_TYPE	e6jdeA3	A: a+b complex topology	X: C-terminal domain of DNA repair helicase RadD (From Topology)	H: C-terminal domain of DNA repair helicase RadD (From Topology)	T: C-terminal domain of DNA repair helicase RadD	F: UNK_F_TYPE	ECOD (1.6)
B [auth A]	DEAD_1	e6jdeA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DEAD_1	ECOD (1.6)
B [auth A]	Helicase_C_1	e6jdeA2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Helicase_C_1	ECOD (1.6)
B [auth A]	UNK_F_TYPE	e6jdeA4	A: few secondary structure elements	X: Rubredoxin-like	H: Zinc finger domain of DNA repair helicase RadD (From Topology)	T: Zinc finger domain of DNA repair helicase RadD	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A]	PF00271	Helicase conserved C-terminal domain (Helicase_C)	Helicase conserved C-terminal domain	The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.	Domain
A [auth B], B [auth A]	PF04851	Type III restriction enzyme, res subunit (ResIII)	Type III restriction enzyme, res subunit	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A]	Putative DNA repair helicase RadD	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides cation binding transition metal ion binding zinc ion binding metal ion binding single-stranded DNA binding	response to stimulus response to chemical response to xenobiotic stimulus response to ionizing radiation response to radiation response to abiotic stimulus cellular process cell division cellular response to stimulus double-strand break repair primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process response to stimulus response to chemical response to xenobiotic stimulus response to ionizing radiation response to radiation response to abiotic stimulus cellular process cell division cellular response to stimulus double-strand break repair primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process macromolecule metabolic process DNA repair postreplication repair organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process translation gene expression macromolecule biosynthetic process biosynthetic process protein metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A]	IPR050742	Helicase and Restriction-Modification Enzyme	Family
A [auth B], B [auth A]	IPR006935	Helicase/UvrB, N-terminal	Domain
A [auth B], B [auth A]	IPR001650	Helicase, C-terminal domain-like	Domain
A [auth B], B [auth A]	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A [auth B], B [auth A]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
A [auth B], B [auth A]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.