Complex structure of MAb 4.2-scFv with tick-borne encephalitis virus envelope protein Domain III
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2 Family | Class II viral fusion proteins C-terminal domain | 8096117 | 4007569 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | E set domains | 8096118 | 3000070 | SCOP2 (2021-05-27) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | PF02832 | e6j5fA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF02832 | ECOD (1.6) |
B [auth H] | PF07686 | e6j5fH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth L] | PF07686 | e6j5fL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
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B [auth H] | mAb 4.2, broadly neutralizing antibody | VH | Mus musculus (house mouse) | IGHV1-77*01, IGHV1-75*01, IGHJ2*01 | V-DOMAIN VH | IG | VH-V-KAPPA | IMGT (202428-2) |
C [auth L] | mAb 4.2, broadly neutralizing antibody | V-KAPPA | Mus musculus (house mouse) | IGKV12-41*02, IGKV12-41*01, IGKJ1*01 | V-DOMAIN V-KAPPA | IG | VH-V-KAPPA | IMGT (202428-2) |
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
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B [auth H] | Heavy Chain | IGHV1 | - | envelope protein | SAbDab (2024-07-12) |
C [auth L] | Light Chain | IGKV12 | Kappa | envelope protein | SAbDab (2024-07-12) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
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| Envelope protein | - | | |
B [auth H] | antibody heavy chain | - | - | - |
C [auth L] | antibody light chain | - | - | - |
Chains | Accession | Name | Type |
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| IPR038345 | Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamily | Homologous Superfamily |
| IPR026470 | Flavivirus envelope glycoprotein E, Stem/Anchor domain | Domain |
| IPR013755 | Flaviviral glycoprotein E, central domain, subdomain 1 | Homologous Superfamily |
| IPR038055 | Flaviviral glycoprotein E, dimerisation domain | Homologous Superfamily |
| IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
| IPR027287 | Glycoprotein E, immunoglobulin-like domain, flavivirus | Domain |
| IPR013756 | Flaviviral glycoprotein E, central domain, subdomain 2 | Homologous Superfamily |
| IPR000336 | Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily | Homologous Superfamily |
| IPR036253 | Flavivirus glycoprotein, central and dimerisation domain superfamily | Homologous Superfamily |