Annotations: 6J4U

Structural basis of tubulin detyrosination by vasohibins-SVBP enzyme complex and functional implications

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	V-set	e6j4uA1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: V-set	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Tubulinyl-Tyr carboxypeptidase 1	peptidase activity catalytic activity, acting on a protein metallocarboxypeptidase activity hydrolase activity metallopeptidase activity exopeptidase activity catalytic activity metalloexopeptidase activity carboxypeptidase activity tubulin-tyrosine carboxypeptidase activity cytoskeletal protein binding actin binding protein binding binding	developmental process multicellular organismal process regulation of biological process regulation of developmental process lymphangiogenesis negative regulation of developmental process biological regulation negative regulation of biological process vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development regulation of lymphangiogenesis anatomical structure formation involved in morphogenesis anatomical structure development developmental process multicellular organismal process regulation of biological process regulation of developmental process lymphangiogenesis negative regulation of developmental process biological regulation negative regulation of biological process vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development regulation of lymphangiogenesis anatomical structure formation involved in morphogenesis anatomical structure development negative regulation of lymphangiogenesis lymph vessel morphogenesis lymph vessel development animal gross anatomical part developmental process regulation of anatomical structure morphogenesis system development angiogenesis regulation of vasculature development tube morphogenesis regulation of multicellular organismal process blood vessel development regulation of multicellular organismal development blood vessel morphogenesis tube development regulation of angiogenesis cellular response to stimulus regulation of cellular process regulation of cellular senescence cellular response to stress response to stimulus response to stress cellular process cellular senescence negative regulation of locomotion regulation of cell motility regulation of blood vessel endothelial cell migration endothelial cell migration negative regulation of endothelial cell migration negative regulation of blood vessel endothelial cell migration regulation of locomotion regulation of cell migration negative regulation of cellular process regulation of endothelial cell migration negative regulation of cell motility blood vessel endothelial cell migration cell migration cell motility locomotion negative regulation of cell migration response to wounding negative regulation of blood vessel morphogenesis negative regulation of angiogenesis negative regulation of vasculature development negative regulation of multicellular organismal process cell cycle regulation of cell cycle proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process negative regulation of cell population proliferation cell population proliferation endothelial cell proliferation negative regulation of endothelial cell proliferation regulation of endothelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation	cellular anatomical structure apical part of cell intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle endoplasmic reticulum intracellular membrane-bounded organelle endomembrane system
B	Small vasohibin-binding protein	enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity molecular function regulator activity peptidase activator activity cytoskeletal protein binding microtubule binding protein binding binding tubulin binding	negative regulation of locomotion regulation of biological process regulation of cell motility regulation of cellular process endothelial cell migration biological regulation negative regulation of biological process negative regulation of endothelial cell migration regulation of locomotion regulation of cell migration negative regulation of cellular process regulation of endothelial cell migration negative regulation of cell motility cell migration negative regulation of locomotion regulation of biological process regulation of cell motility regulation of cellular process endothelial cell migration biological regulation negative regulation of biological process negative regulation of endothelial cell migration regulation of locomotion regulation of cell migration negative regulation of cellular process regulation of endothelial cell migration negative regulation of cell motility cell migration cellular process cell motility locomotion negative regulation of cell migration negative regulation of post-translational protein modification regulation of protein modification process regulation of protein ubiquitination regulation of primary metabolic process protein ubiquitination negative regulation of protein modification process protein metabolic process negative regulation of protein ubiquitination regulation of protein modification by small protein conjugation or removal protein modification process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of protein modification by small protein conjugation or removal regulation of post-translational protein modification regulation of protein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule modification metabolic process macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization proteolysis developmental process multicellular organismal process plasma membrane bounded cell projection organization cellular developmental process cell projection organization cell development neuron projection development nervous system development axon development cellular component organization generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation neuron development anatomical structure development cellular component organization or biogenesis animal gross anatomical part developmental process system development regulation of catalytic activity regulation of peptidase activity regulation of molecular function regulation of proteolysis regulation of metallopeptidase activity regulation of hydrolase activity	cellular anatomical structure apical part of cell intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle extracellular region cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR028131	Tubulinyl-Tyr carboxypeptidase	Family
B	IPR031378	Small vasohibin-binding protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: Q7L8A9	osteosarcoma
B	: Q8N300	intellectual disability osteosarcoma medulloblastoma ovarian cancer oligodendroglioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6J4U | pdb_00006j4u

Structural basis of tubulin detyrosination by vasohibins-SVBP enzyme complex and functional implications

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation