Annotations: 6J45

Crystal structure of E. coli peptide deformylase enzyme and chaperone trigger factor fitted into the cryo-EM density map of the complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth P]	SCOP2 Family	Peptide deformylase	8097769	4002432	SCOP2 (2022-06-29)
A [auth P]	SCOP2 Superfamily	Peptide deformylase	8097770	3001229	SCOP2 (2022-06-29)
A [auth P]	SCOP2B Superfamily	Peptide deformylase	8033706	3001229	SCOP2B (2022-06-29)
B [auth Q]	SCOP2B Superfamily	Trigger factor ribosome-binding domain	8037652	3001141	SCOP2B (2022-06-29)
B [auth Q]	SCOP2B Superfamily	Rotamase-like	8041597	3000622	SCOP2B (2022-06-29)
B [auth Q]	SCOP2B Superfamily	Triger factor/SurA peptide-binding domain-like	8041594	3001632	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth P]	LlgE_F_G_D1	e6j45P1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: LlgE_F_G_D1	ECOD (v295.2)
B [auth Q]	LlgE_F_G_D1	e6j45Q1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: LlgE_F_G_D1	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth P]	PF01327	Polypeptide deformylase (Pep_deformylase)	Polypeptide deformylase		Domain
B [auth Q]	PF05698	Bacterial trigger factor protein (TF) C-terminus (Trigger_C)	Bacterial trigger factor protein (TF) C-terminus	-	Family
B [auth Q]	PF05697	Bacterial trigger factor protein (TF) (Trigger_N)	Bacterial trigger factor protein (TF)	-	Family
B [auth Q]	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)	FKBP-type peptidyl-prolyl cis-trans isomerase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth P]	Peptide deformylase	peptide deformylase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding zinc ion binding peptide deformylase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding zinc ion binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding	N-terminal protein amino acid modification macromolecule modification metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process biosynthetic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
B [auth Q]	Trigger factor	isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding protein folding chaperone identical protein binding protein binding	primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process 'de novo' cotranslational protein folding metabolic process cellular process protein metabolic process macromolecule metabolic process 'de novo' protein folding protein unfolding localization primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process 'de novo' cotranslational protein folding metabolic process cellular process protein metabolic process macromolecule metabolic process 'de novo' protein folding protein unfolding localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus response to copper ion response to metal ion response to chemical stress response to copper ion stress response to metal ion	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth P]	IPR023635	Peptide deformylase	Family
A [auth P]	IPR036821	Peptide deformylase superfamily	Homologous Superfamily
B [auth Q]	IPR046357	Peptidyl-prolyl cis-trans isomerase domain superfamily	Homologous Superfamily
B [auth Q]	IPR036611	Trigger factor ribosome-binding domain superfamily	Homologous Superfamily
B [auth Q]	IPR008881	Trigger factor, ribosome-binding, bacterial	Domain
B [auth Q]	IPR027304	Trigger factor/SurA domain superfamily	Homologous Superfamily
B [auth Q]	IPR037041	Trigger factor, C-terminal domain superfamily	Homologous Superfamily
B [auth Q]	IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Domain
B [auth Q]	IPR008880	Trigger factor, C-terminal	Domain
B [auth Q]	IPR005215	Trigger factor	Family