6J40 | pdb_00006j40

Structure of C2S2M2-type PSII-FCPII supercomplex from diatom


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
EA [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094731 3001547 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094731 3001547 SCOP2B (2022-06-29)
KA [auth o]SCOP2B SuperfamilyOMPA barrel-like 8095677 3000208 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyOMPA barrel-like 8095677 3000208 SCOP2B (2022-06-29)
MA [auth u]SCOP2B SuperfamilyPsbU/PolX domain-like 8094223 3000893 SCOP2B (2022-06-29)
O [auth U]SCOP2B SuperfamilyPsbU/PolX domain-like 8094223 3000893 SCOP2B (2022-06-29)
NA [auth v]SCOP2B SuperfamilyCytochrome c 8094925 3000815 SCOP2B (2022-06-29)
P [auth V]SCOP2B SuperfamilyCytochrome c 8094925 3000815 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AUQ_cone6j40A1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
Y [auth a]UQ_cone6j40a1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
CUQ_cone6j40C1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
AA [auth c]UQ_cone6j40c1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
BA [auth d]UQ_cone6j40d1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
DUQ_cone6j40D1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
EUQ_cone6j40E1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
CA [auth e]UQ_cone6j40e1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
FUQ_cone6j40F1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
DA [auth f]UQ_cone6j40f1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
EA [auth h]UQ_cone6j40h1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
G [auth H]UQ_cone6j40H1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
GA [auth j]UQ_cone6j40j1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
I [auth J]UQ_cone6j40J1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
IA [auth l]UQ_cone6j40l1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
K [auth L]UQ_cone6j40L1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
L [auth M]UQ_cone6j40M1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
JA [auth m]UQ_cone6j40m1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
KA [auth o]UQ_cone6j40o1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
M [auth O]UQ_cone6j40O1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
MA [auth u]UQ_cone6j40u1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
O [auth U]UQ_cone6j40U1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
NA [auth v]UQ_cone6j40v1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
P [auth V]UQ_cone6j40V1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
OA [auth y]UQ_cone6j40y1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
Q [auth Y]UQ_cone6j40Y1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
PA [auth x]UQ_cone6j40x1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
R [auth X]UQ_cone6j40X1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
QA [auth z]UQ_cone6j40z1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
S [auth Z]UQ_cone6j40Z1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
RA [auth q]UQ_cone6j40q1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
T [auth Q]UQ_cone6j40Q1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
SA [auth w]Levi_coate6j40w1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Levi_coatECOD (v295.2)
U [auth W]Levi_coate6j40W1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Levi_coatECOD (v295.2)
AB [auth 15]UQ_cone6j40151 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
CB [auth 17]UQ_cone6j40171 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
DB [auth 18]UQ_cone6j40181 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
JB [auth 33]UQ_cone6j40331 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
KB [auth 34]UQ_cone6j40341 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
LB [auth 35]UQ_cone6j40351 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
MB [auth 36]UQ_cone6j40361 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
NB [auth 37]UQ_cone6j40371 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
OB [auth 38]UQ_cone6j40381 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
WA [auth 11]UQ_cone6j40111 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
XA [auth 12]UQ_cone6j40121 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
YA [auth 13]UQ_cone6j40131 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
ZA [auth 14]UQ_cone6j40141 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
IB [auth 32]UQ_cone6j40321 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
HB [auth 31]UQ_cone6j40311 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
BB [auth 16]UQ_cone6j40161 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
FA [auth i]UQ_cone6j40i1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
H [auth I]UQ_cone6j40I1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
BUQ_cone6j40B1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
Z [auth b]UQ_cone6j40b1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
LA [auth t]UQ_cone6j40t1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
N [auth T]UQ_cone6j40T1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
HA [auth k]UQ_cone6j40k1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)
J [auth K]UQ_cone6j40K1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: UQ_conECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
Y [auth a]
Photosystem II reaction center protein D1---
AA [auth c],
C
Photosystem II chlorophyll protein CP43---
BA [auth d],
D
Photosystem II reaction center protein D2---
CA [auth e],
E
Cytochrome b559 subunit alpha---
DA [auth f],
F
Cytochrome b559 subunit beta---
EA [auth h],
G [auth H]
Photosystem II reaction center protein H
GA [auth j],
I [auth J]
Photosystem II reaction center protein J---
IA [auth l],
K [auth L]
Photosystem II reaction center protein L---
JA [auth m],
L [auth M]
Photosystem II reaction center protein M---
KA [auth o],
M [auth O]
Extrinsic protein in photosystem II-
MA [auth u],
O [auth U]
Extrinsic protein in photosystem II-
NA [auth v],
P [auth V]
Cytochrome c-550
OA [auth y],
Q [auth Y]
Photosystem II reaction center protein Ycf12---
PA [auth x],
R [auth X]
Photosystem II reaction center X protein-
QA [auth z],
S [auth Z]
Photosystem II reaction center protein Z---
RA [auth q],
T [auth Q]
Extrinsic protein in photosystem II- - -
SA [auth w],
U [auth W]
Photosystem II reaction center protein W---
TA [auth 5],
V [auth 0]
Unknown protein 0---
UA [auth 6],
W [auth 1]
Unknown protein 1---
VA [auth 7],
X [auth 2]
Unknown protein 2---
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1---
EB [auth 19],
PB [auth 39]
Fucoxanthin chlorophyll a/c-binding protein monomer 1---
FB [auth 20],
QB [auth 40]
Fucoxanthin chlorophyll a/c-binding protein monomer 2---
GB [auth 21],
RB [auth 41]
Fucoxanthin chlorophyll a/c-binding protein monomer 3---
FA [auth i],
H [auth I]
Photosystem II reaction center protein I---
B,
Z [auth b]
Photosystem II chlorophyll protein CP47---
LA [auth t],
N [auth T]
Photosystem II reaction center protein T---
HA [auth k],
J [auth K]
Photosystem II reaction center protein K---