Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyHelical scaffold and wing domains of SecA 8040160 3001322 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8040165 3002019 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPre-protein crosslinking domain of SecA 8040159 3001119 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8040163 3002019 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8040163 3002019 SCOP2B (2022-06-29)
C [auth E]SCOP2B SuperfamilyProtein translocase subunit SecE-like 8053312 3002174 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyGFP-like 8096046 3000576 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASecA_PP_binde6itcA4 A: alpha arraysX: Pre-protein crosslinking domain of SecA (From Topology)H: Pre-protein crosslinking domain of SecA (From Topology)T: Pre-protein crosslinking domain of SecAF: SecA_PP_bindECOD (1.6)
ASecA_SWe6itcA1 A: alpha complex topologyX: Helical scaffold and wing domains of SecA (From Topology)H: Helical scaffold and wing domains of SecA (From Topology)T: Helical scaffold and wing domains of SecAF: SecA_SWECOD (1.6)
ASecA_DEADe6itcA2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: SecA_DEADECOD (1.6)
AHelicase_C_10e6itcA3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Helicase_C_10ECOD (1.6)
B [auth Y]SecYe6itcY1 A: alpha complex topologyX: Preprotein translocase SecY subunit (From Topology)H: Preprotein translocase SecY subunit (From Topology)T: Preprotein translocase SecY subunitF: SecYECOD (1.6)
C [auth E]SecEe6itcE1 A: extended segmentsX: Preprotein translocase SecE subunit (From Topology)H: Preprotein translocase SecE subunit (From Topology)T: Preprotein translocase SecE subunitF: SecEECOD (1.6)
D [auth V]V-set_8e6itcV1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
E [auth B]PRK10954e6itcB1 A: extended segmentsX: NC100 (From Topology)H: NC100 (From Topology)T: NC100F: PRK10954ECOD (1.6)
F [auth G]GFPe6itcG1 A: beta barrelsX: GFP-like (From Topology)H: GFP-like (From Topology)T: GFP-likeF: GFPECOD (1.6)
G [auth C]V-set_12e6itcC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D [auth V]Heavy ChainIGHV1 -protein translocase subunit secy | protein translocase subunit seceSAbDab (2024-08-16)
G [auth C]Heavy ChainIGHV1 -green fluorescent protein | protein translocase subunit secaSAbDab (2024-08-16)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01043SecA preprotein cross-linking domain (SecA_PP_bind)SecA preprotein cross-linking domainThe SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domai ...The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [1].
Domain
PF07516SecA Wing and Scaffold domain (SecA_SW)SecA Wing and Scaffold domain- Family
PF21090SecA P-loop domain (P-loop_SecA)SecA P-loop domainSecA is the preprotein translocase ATPase subunit and a superfamily 2 (SF2) RNA helicase [4]. This entry corresponds to the second P-loop domain.Domain
B [auth Y]PF00344SecY (SecY)SecY- Family
C [auth E]PF00584SecE/Sec61-gamma subunits of protein translocation complex (SecE)SecE/Sec61-gamma subunits of protein translocation complex- Family
F [auth G]PF01353Green fluorescent protein (GFP)Green fluorescent protein- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Protein translocase subunit SecA
B [auth Y]Protein translocase subunit SecY
C [auth E]Protein translocase subunit SecE
D [auth V]Nanobody---
E [auth B]Translocating peptide
F [auth G]Green fluorescent protein- -
G [auth C]Nanobody---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR011130SecA, preprotein cross-linking domainDomain
IPR011116SecA Wing/ScaffoldDomain
IPR036266SecA, Wing/Scaffold superfamilyHomologous Superfamily
IPR001650Helicase, C-terminal domain-likeDomain
IPR000185Protein translocase subunit SecAFamily
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
IPR004027SEC-C motifConserved Site
IPR014018SecA motor DEADDomain
IPR020937SecA conserved siteConserved Site
IPR011115SecA DEAD-like, N-terminalDomain
IPR044722SecA, C-terminal helicase domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR036670SecA, preprotein cross-linking domain superfamilyHomologous Superfamily
B [auth Y]IPR002208SecY/SEC61-alpha familyFamily
B [auth Y]IPR030659SecY conserved siteConserved Site
B [auth Y]IPR026593Protein translocase subunit SecYFamily
B [auth Y]IPR023201SecY domain superfamilyHomologous Superfamily
C [auth E]IPR005807SecE subunit of protein translocation complex, bacterial-likeFamily
C [auth E]IPR001901Protein translocase complex, SecE/Sec61-gamma subunitFamily
C [auth E]IPR038379SecE superfamilyHomologous Superfamily
E [auth B]IPR006664Outer membrane protein, bacterialDomain
E [auth B]IPR000498Outer membrane protein OmpA-like, transmembrane domainDomain
E [auth B]IPR006690Outer membrane protein, OmpA-like, conserved siteConserved Site
E [auth B]IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
E [auth B]IPR036737OmpA-like domain superfamilyHomologous Superfamily
E [auth B]IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
E [auth B]IPR006665OmpA-like domainDomain
E [auth B]IPR002368Outer membrane protein, OmpAFamily
F [auth G]IPR000786Green fluorescent protein, GFPFamily
F [auth G]IPR011584Green fluorescent protein-relatedFamily
F [auth G]IPR009017Green fluorescent proteinHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
F [auth G]GYS Parent Component: SER, TYR, GLY

RESIDAA0184

PSI-MOD :  L-serine 5-imidazolinone glycine MOD:00192