Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM4 at 1.9 Angstron resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d6ir1a_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | Fluorescent proteins | automated matches | (Anaplasma marginale ) [TaxId: 770 ], | SCOPe (2.08) |
| B | d6ir1b_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Camelus bactrianus ) [TaxId: 9837 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | V-set | e6ir1A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: V-set | ECOD (v294.1) |
| B | V-set | e6ir1B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: V-set | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (utative) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| Heavy Chain | IGHV1 | - | mcherry fluorescent protein | SAbDab (2026-04-24) |
