6IFM
Crystal structure of DNA bound VapBC from Salmonella typhimurium
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PIN | e6ifmA1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PIN | ECOD (1.6) |
B [auth E] | PIN | e6ifmE1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PIN | ECOD (1.6) |
C | PIN | e6ifmC1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PIN | ECOD (1.6) |
D [auth G] | PIN | e6ifmG1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PIN | ECOD (1.6) |
E [auth B] | UNK_F_TYPE | e6ifmB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: UNK_F_TYPE | ECOD (1.6) |
F | UNK_F_TYPE | e6ifmF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: UNK_F_TYPE | ECOD (1.6) |
G [auth H] | UNK_F_TYPE | e6ifmH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: UNK_F_TYPE | ECOD (1.6) |
H [auth D] | UNK_F_TYPE | e6ifmD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (utative) |
B [auth E] | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (utative) |
C | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (utative) |
D [auth G] | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (utative) |
E [auth B] | 2.10.260.10 | Mainly Beta | Ribbon | Pemi-like Protein 1 | Chain: D | CATH (utative) |
F | 2.10.260.10 | Mainly Beta | Ribbon | Pemi-like Protein 1 | Chain: D | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth E], C, D [auth G] | PF01850 | PIN domain (PIN) | PIN domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, B [auth E], C, D [auth G] | tRNA(fMet)-specific endonuclease VapC |
| - | - |
E [auth B], F, G [auth H], H [auth D] | Antitoxin VapB | - | - | |
I [auth M] | DNA forward (27-MER) | - | - | - |
J [auth N] | DNA backward (27-MER) | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth E], C, D [auth G] | IPR002716 | PIN domain | Domain |
A, B [auth E], C, D [auth G] | IPR029060 | PIN-like domain superfamily | Homologous Superfamily |
A, B [auth E], C, D [auth G] | IPR022907 | VapC family | Family |
A, B [auth E], C, D [auth G] | IPR050556 | Type II toxin-antitoxin system RNase | Family |
E [auth B], F, G [auth H], H [auth D] | IPR051734 | Type II toxin-antitoxin VapB antitoxins | Family |
E [auth B], F, G [auth H], H [auth D] | IPR047976 | Antitoxin VapB2-like | Family |
E [auth B], F, G [auth H], H [auth D] | IPR037914 | SpoVT-AbrB domain superfamily | Homologous Superfamily |
E [auth B], F, G [auth H], H [auth D] | IPR007159 | SpoVT-AbrB domain | Domain |