Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the C2221 form


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth V]SCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
B [auth C]SCOP2 FamilyBTB/POZ domain 8093641 4001139 SCOP2 (2022-06-29)
B [auth C]SCOP2 SuperfamilyPOZ domain 8093642 3000894 SCOP2 (2022-06-29)
A [auth B]SCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth V]ATP-synte6i7qV1 A: beta barrelsX: jelly-rollH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.2)
B [auth C]ATP-synte6i7qC1 A: beta barrelsX: jelly-rollH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.2)
A [auth B]ATP-synte6i7qB1 A: beta barrelsX: jelly-rollH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth V]PF17211VHL box domain (VHL_C)VHL box domainThis domain represents the short C-terminal alpha helical domain from the VHL protein [1]. Domain
D [auth V]PF01847VHL beta domain (VHL)VHL beta domainVHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA. Domain
B [auth C]PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domainDomain
A [auth B]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth V]von Hippel-Lindau disease tumor suppressor
C [auth H]Endothelial PAS domain-containing protein 1
B [auth C]Elongin-C
A [auth B]Elongin-B

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
D [auth V]P40337
C [auth H]Q99814
A [auth B]Q15370

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
C [auth H]HYP Parent Component: PRO

AA0030

:  4-hydroxy-L-proline MOD:00039
A [auth B]CSD Parent Component: CYS

AA0030 , AA0262

:  4-hydroxy-L-proline MOD:00039 , L-cysteine sulfinic acid MOD:00267