6I1P
Respiratory complex I from Thermus thermophilus with bound NADH
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 1] | SCOP2B Superfamily | Nqo1C-terminal domain-like | 8041340 | 3001171 | SCOP2B (2022-06-29) |
A [auth 1] | SCOP2B Superfamily | Nqo1 FMN-binding domain-like | 8041341 | 3001265 | SCOP2B (2022-06-29) |
A [auth 1] | SCOP2B Superfamily | Nqo1 middle domain-like | 8041342 | 3000871 | SCOP2B (2022-06-29) |
Q [auth B] | SCOP2B Superfamily | Nqo1C-terminal domain-like | 8041340 | 3001171 | SCOP2B (2022-06-29) |
Q [auth B] | SCOP2B Superfamily | Nqo1 middle domain-like | 8041342 | 3000871 | SCOP2B (2022-06-29) |
Q [auth B] | SCOP2B Superfamily | Nqo1 FMN-binding domain-like | 8041341 | 3001265 | SCOP2B (2022-06-29) |
J [auth A] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8106702 | 3002200 | SCOP2B (2022-06-29) |
Z [auth P] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8106702 | 3002200 | SCOP2B (2022-06-29) |
K [auth J] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8053515 | 3002200 | SCOP2B (2022-06-29) |
AA [auth R] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8053515 | 3002200 | SCOP2B (2022-06-29) |
BA [auth S] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8053512 | 3002200 | SCOP2B (2022-06-29) |
L [auth K] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8053512 | 3002200 | SCOP2B (2022-06-29) |
M [auth L] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054164 | 3002280 | SCOP2B (2022-06-29) |
M [auth L] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8047669 | 3002280 | SCOP2B (2022-06-29) |
CA [auth T] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054164 | 3002280 | SCOP2B (2022-06-29) |
CA [auth T] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8047669 | 3002280 | SCOP2B (2022-06-29) |
DA [auth U] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054163 | 3002280 | SCOP2B (2022-06-29) |
DA [auth U] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054162 | 3002280 | SCOP2B (2022-06-29) |
N [auth M] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054162 | 3002280 | SCOP2B (2022-06-29) |
N [auth M] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054163 | 3002280 | SCOP2B (2022-06-29) |
EA [auth V] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054158 | 3002280 | SCOP2B (2022-06-29) |
EA [auth V] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054159 | 3002280 | SCOP2B (2022-06-29) |
O [auth N] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054159 | 3002280 | SCOP2B (2022-06-29) |
O [auth N] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054158 | 3002280 | SCOP2B (2022-06-29) |
FA [auth Q] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054148 | 3002280 | SCOP2B (2022-06-29) |
P [auth H] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054148 | 3002280 | SCOP2B (2022-06-29) |
B [auth 2] | SCOP2B Superfamily | Thioredoxin-like | 8041344 | 3000031 | SCOP2B (2022-06-29) |
R [auth C] | SCOP2B Superfamily | Thioredoxin-like | 8041344 | 3000031 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041348 | 3000020 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8041347 | 3000113 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8041346 | 3001453 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2B Superfamily | ADC-like | 8041345 | 3001132 | SCOP2B (2022-06-29) |
S [auth D] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8041346 | 3001453 | SCOP2B (2022-06-29) |
S [auth D] | SCOP2B Superfamily | ADC-like | 8041345 | 3001132 | SCOP2B (2022-06-29) |
S [auth D] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041348 | 3000020 | SCOP2B (2022-06-29) |
S [auth D] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8041347 | 3000113 | SCOP2B (2022-06-29) |
D [auth 4] | SCOP2B Superfamily | HydB/Nqo4-like | 8041349 | 3001849 | SCOP2B (2022-06-29) |
T [auth E] | SCOP2B Superfamily | HydB/Nqo4-like | 8041349 | 3001849 | SCOP2B (2022-06-29) |
E [auth 5] | SCOP2B Superfamily | Nqo5-like | 8041351 | 3001071 | SCOP2B (2022-06-29) |
U [auth F] | SCOP2B Superfamily | Nqo5-like | 8041351 | 3001071 | SCOP2B (2022-06-29) |
F [auth 6] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8041352 | 3002291 | SCOP2B (2022-06-29) |
V [auth G] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8041352 | 3002291 | SCOP2B (2022-06-29) |
G [auth 9] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041354 | 3000020 | SCOP2B (2022-06-29) |
W [auth O] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041354 | 3000020 | SCOP2B (2022-06-29) |
H [auth 7] | SCOP2B Superfamily | Frataxin/Nqo15-like | 8041353 | 3001840 | SCOP2B (2022-06-29) |
X [auth I] | SCOP2B Superfamily | Frataxin/Nqo15-like | 8041353 | 3001840 | SCOP2B (2022-06-29) |
I [auth W] | SCOP2B Superfamily | TTHA1528-like | 8033165 | 3001713 | SCOP2B (2022-06-29) |
Y [auth X] | SCOP2B Superfamily | TTHA1528-like | 8033165 | 3001713 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | NADH_4Fe-4S | e6i1p12 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: NADH_4Fe-4S | ECOD (1.6) |
A [auth 1] | SLBB | e6i1p13 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: SLBB | ECOD (1.6) |
A [auth 1] | Complex1_51K | e6i1p11 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: Complex1_51K | ECOD (1.6) |
Q [auth B] | NADH_4Fe-4S | e6i1pB1 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: NADH_4Fe-4S | ECOD (1.6) |
Q [auth B] | SLBB | e6i1pB2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: SLBB | ECOD (1.6) |
Q [auth B] | Complex1_51K | e6i1pB3 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: Complex1_51K | ECOD (1.6) |
J [auth A] | Oxidored_q4 | e6i1pA1 | A: extended segments | X: NADH-quinone oxidoreductase subunit A (From Topology) | H: NADH-quinone oxidoreductase subunit A (From Topology) | T: NADH-quinone oxidoreductase subunit A | F: Oxidored_q4 | ECOD (1.6) |
Z [auth P] | Oxidored_q4 | e6i1pP1 | A: extended segments | X: NADH-quinone oxidoreductase subunit A (From Topology) | H: NADH-quinone oxidoreductase subunit A (From Topology) | T: NADH-quinone oxidoreductase subunit A | F: Oxidored_q4 | ECOD (1.6) |
K [auth J] | Oxidored_q3 | e6i1pJ1 | A: extended segments | X: NADH-quinone oxidoreductase subunit J (From Topology) | H: NADH-quinone oxidoreductase subunit J (From Topology) | T: NADH-quinone oxidoreductase subunit J | F: Oxidored_q3 | ECOD (1.6) |
AA [auth R] | Oxidored_q3 | e6i1pR1 | A: extended segments | X: NADH-quinone oxidoreductase subunit J (From Topology) | H: NADH-quinone oxidoreductase subunit J (From Topology) | T: NADH-quinone oxidoreductase subunit J | F: Oxidored_q3 | ECOD (1.6) |
BA [auth S] | Oxidored_q2 | e6i1pS1 | A: alpha complex topology | X: NADH-quinone oxidoreductase subunit K (From Topology) | H: NADH-quinone oxidoreductase subunit K (From Topology) | T: NADH-quinone oxidoreductase subunit K | F: Oxidored_q2 | ECOD (1.6) |
L [auth K] | Oxidored_q2 | e6i1pK1 | A: alpha complex topology | X: NADH-quinone oxidoreductase subunit K (From Topology) | H: NADH-quinone oxidoreductase subunit K (From Topology) | T: NADH-quinone oxidoreductase subunit K | F: Oxidored_q2 | ECOD (1.6) |
M [auth L] | Proton_antipo_M | e6i1pL1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: Proton_antipo_M | ECOD (1.6) |
CA [auth T] | Proton_antipo_M | e6i1pT1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: Proton_antipo_M | ECOD (1.6) |
DA [auth U] | Proton_antipo_M | e6i1pU1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: Proton_antipo_M | ECOD (1.6) |
N [auth M] | Proton_antipo_M | e6i1pM1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: Proton_antipo_M | ECOD (1.6) |
EA [auth V] | Proton_antipo_M | e6i1pV1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: Proton_antipo_M | ECOD (1.6) |
O [auth N] | Proton_antipo_M | e6i1pN1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: Proton_antipo_M | ECOD (1.6) |
FA [auth Q] | NADHdh | e6i1pQ1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related | F: NADHdh | ECOD (1.6) |
P [auth H] | NADHdh | e6i1pH1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related | F: NADHdh | ECOD (1.6) |
B [auth 2] | 2Fe-2S_thioredx_N | e6i1p22 | A: alpha bundles | X: NQO2 helical bundle domain (From Topology) | H: NQO2 helical bundle domain (From Topology) | T: NQO2 helical bundle domain | F: 2Fe-2S_thioredx_N | ECOD (1.6) |
B [auth 2] | 2Fe-2S_thioredx_C | e6i1p21 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: 2Fe-2S_thioredx_C | ECOD (1.6) |
R [auth C] | 2Fe-2S_thioredx_N | e6i1pC2 | A: alpha bundles | X: NQO2 helical bundle domain (From Topology) | H: NQO2 helical bundle domain (From Topology) | T: NQO2 helical bundle domain | F: 2Fe-2S_thioredx_N | ECOD (1.6) |
R [auth C] | 2Fe-2S_thioredx_C | e6i1pC1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: 2Fe-2S_thioredx_C | ECOD (1.6) |
C [auth 3] | Molydop_binding | e6i1p35 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
C [auth 3] | PRK09129 | e6i1p37 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PRK09129 | ECOD (1.6) |
C [auth 3] | Fer2_4 | e6i1p31 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_4 | ECOD (1.6) |
C [auth 3] | Molybdop_Fe4S4 | e6i1p32 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4 | ECOD (1.6) |
C [auth 3] | Molybdopterin_2nd | e6i1p33 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
C [auth 3] | NuoG_2nd | e6i1p36 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: NuoG_2nd | ECOD (1.6) |
C [auth 3] | NADH-G_4Fe-4S_3 | e6i1p34 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: NADH-G_4Fe-4S_3 | ECOD (1.6) |
S [auth D] | Molydop_binding | e6i1pD7 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
S [auth D] | PRK09129 | e6i1pD4 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PRK09129 | ECOD (1.6) |
S [auth D] | Fer2_4 | e6i1pD3 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_4 | ECOD (1.6) |
S [auth D] | Molybdop_Fe4S4 | e6i1pD5 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4 | ECOD (1.6) |
S [auth D] | Molybdopterin_2nd | e6i1pD1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
S [auth D] | NuoG_2nd | e6i1pD6 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: NuoG_2nd | ECOD (1.6) |
S [auth D] | NADH-G_4Fe-4S_3 | e6i1pD2 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: NADH-G_4Fe-4S_3 | ECOD (1.6) |
D [auth 4] | Complex1_49kDa_1st | e6i1p43 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
D [auth 4] | NuoD | e6i1p42 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
D [auth 4] | Complex1_49kDa_2nd | e6i1p41 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
T [auth E] | Complex1_49kDa_1st | e6i1pE2 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
T [auth E] | NuoD | e6i1pE1 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
T [auth E] | Complex1_49kDa_2nd | e6i1pE3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
E [auth 5] | Complex1_30kDa | e6i1p51 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
U [auth F] | Complex1_30kDa | e6i1pF1 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
F [auth 6] | Oxidored_q6 | e6i1p61 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
V [auth G] | Oxidored_q6 | e6i1pG1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
G [auth 9] | Fer4_21_1 | e6i1p91 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
W [auth O] | Fer4_21_1 | e6i1pO1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
H [auth 7] | NADH_Oxid_Nqo15 | e6i1p71 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: NADH_Oxid_Nqo15 | ECOD (1.6) |
X [auth I] | NADH_Oxid_Nqo15 | e6i1pI1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: NADH_Oxid_Nqo15 | ECOD (1.6) |
I [auth W] | DUF3197 | e6i1pW1 | A: a+b two layers | X: TTHA1528-like | H: TTHA1528-like (From Topology) | T: TTHA1528-like | F: DUF3197 | ECOD (1.6) |
Y [auth X] | DUF3197 | e6i1pX1 | A: a+b two layers | X: TTHA1528-like | H: TTHA1528-like (From Topology) | T: TTHA1528-like | F: DUF3197 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 1], Q [auth B] | PF10531 | SLBB domain (SLBB) | SLBB domain | - | Domain |
A [auth 1], Q [auth B] | PF22461 | SLBB domain (SLBB_2) | SLBB domain | This entry represents a set of SLBB domains [5]. | Domain |
A [auth 1], Q [auth B] | PF01512 | Respiratory-chain NADH dehydrogenase 51 Kd subunit (Complex1_51K) | Respiratory-chain NADH dehydrogenase 51 Kd subunit | - | Family |
A [auth 1], Q [auth B] | PF10589 | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S) | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | - | Domain |
J [auth A], Z [auth P] | PF00507 | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (Oxidored_q4) | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | - | Family |
AA [auth R], K [auth J] | PF00499 | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (Oxidored_q3) | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 | - | Family |
BA [auth S], L [auth K] | PF00420 | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2) | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L | - | Family |
CA [auth T], M [auth L] | PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family |
CA [auth T], M [auth L] | PF00662 | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N) | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus | - | Family |
DA [auth U], N [auth M] | PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family |
EA [auth V], O [auth N] | PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family |
FA [auth Q], P [auth H] | PF00146 | NADH dehydrogenase (NADHdh) | NADH dehydrogenase | - | Family |
B [auth 2], R [auth C] | PF01257 | Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx) | Thioredoxin-like [2Fe-2S] ferredoxin | - | Family |
C [auth 3], S [auth D] | PF01568 | Molydopterin dinucleotide binding domain (Molydop_binding) | Molydopterin dinucleotide binding domain | This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entir ... | Domain |
C [auth 3], S [auth D] | PF04879 | Molybdopterin oxidoreductase Fe4S4 domain (Molybdop_Fe4S4) | Molybdopterin oxidoreductase Fe4S4 domain | This domain is found in formate dehydrogenase H for which the structure is known. This first domain (residues 1 to 60) of PDB:1aa6 is an Fe4S4 cluster just below the protein surface [1]. | Domain |
C [auth 3], S [auth D] | PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | - | Family |
C [auth 3], S [auth D] | PF00111 | 2Fe-2S iron-sulfur cluster binding domain (Fer2) | 2Fe-2S iron-sulfur cluster binding domain | - | Domain |
C [auth 3], S [auth D] | PF22117 | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain (Nqo3_Fer4) | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain | NADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contain ... | Domain |
C [auth 3], S [auth D] | PF10588 | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3) | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region | - | Domain |
D [auth 4], T [auth E] | PF00346 | Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa) | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | - | Family |
E [auth 5], U [auth F] | PF00329 | Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa) | Respiratory-chain NADH dehydrogenase, 30 Kd subunit | - | Family |
F [auth 6], V [auth G] | PF01058 | NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6) | NADH ubiquinone oxidoreductase, 20 Kd subunit | - | Family |
G [auth 9], W [auth O] | PF00037 | 4Fe-4S binding domain (Fer4) | 4Fe-4S binding domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. | Domain |
H [auth 7], X [auth I] | PF11497 | NADH-quinone oxidoreductase chain 15 (NADH_Oxid_Nqo15) | NADH-quinone oxidoreductase chain 15 | - | Family |
I [auth W], Y [auth X] | PF11432 | Protein of unknown function (DUF3197) (DUF3197) | Protein of unknown function (DUF3197) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex I (NADH dehydrogenase) and supercomplexes | H+ or Na+ translocating NADH dehydrogenase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |