6HWI
Immature M-PMV capsid hexamer structure in intact virus particles
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Gag_p24_C | e6hwiA2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: Gag_p24_C | ECOD (1.6) |
A | Gag_p24_like | e6hwiA1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: Gag_p24_like | ECOD (1.6) |
B | Gag_p24_C | e6hwiB1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: Gag_p24_C | ECOD (1.6) |
B | Gag_p24_like | e6hwiB2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: Gag_p24_like | ECOD (1.6) |
C | Gag_p24_C | e6hwiC1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: Gag_p24_C | ECOD (1.6) |
C | Gag_p24_like | e6hwiC2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: Gag_p24_like | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00607 | gag protein p24 N-terminal domain (Gag_p24) | gag protein p24 N-terminal domain | p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. | Domain | |
PF19317 | Gag protein p24 C-terminal domain (Gag_p24_C) | Gag protein p24 C-terminal domain | p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045345 | Retroviral nucleocapsid Gag protein p24, C-terminal domain | Domain | |
IPR036157 | dUTPase-like superfamily | Homologous Superfamily | |
IPR001995 | Peptidase A2A, retrovirus, catalytic | Domain | |
IPR038124 | Beta-retroviral matrix superfamily | Homologous Superfamily | |
IPR003322 | Beta-retroviral matrix protein | Domain | |
IPR001878 | Zinc finger, CCHC-type | Domain | |
IPR008919 | Retrovirus capsid, N-terminal | Homologous Superfamily | |
IPR010999 | Retroviral matrix protein | Homologous Superfamily | |
IPR021109 | Aspartic peptidase domain superfamily | Homologous Superfamily | |
IPR001969 | Aspartic peptidase, active site | Active Site | |
IPR029054 | dUTPase-like | Domain | |
IPR000467 | G-patch domain | Domain | |
IPR018061 | Retropepsins | Domain | |
IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily | |
IPR033704 | dUTPase, trimeric | Domain | |
IPR034170 | Retropepsin-like catalytic domain | Domain | |
IPR050195 | Primate lentivirus group Gag polyprotein | Family | |
IPR008916 | Retrovirus capsid, C-terminal | Homologous Superfamily |