Structure of the photosynthetic complex I from Thermosynechococcus elongatus
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B [auth C] | SCOP2 Family | NADH-ubiquinone oxidoreductase chain 3-like | 8067560 | 4005842 | SCOP2 (2022-06-29) |
| B [auth C] | SCOP2 Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8106707 | 3002200 | SCOP2 (2022-06-29) |
| C [auth D] | SCOP2 Family | ND4 antiporter-like subunits | 8059299 | 4005749 | SCOP2 (2022-06-29) |
| C [auth D] | SCOP2 Superfamily | Antiporter subunits half-channel-like | 8093348 | 3002280 | SCOP2 (2022-06-29) |
| C [auth D] | SCOP2 Superfamily | Antiporter subunits half-channel-like | 8059300 | 3002280 | SCOP2 (2022-06-29) |
| I [auth H] | SCOP2 Family | Nqo4-like | 8085740 | 4000433 | SCOP2 (2022-06-29) |
| I [auth H] | SCOP2 Superfamily | HydB/Nqo4-like | 8085741 | 3001849 | SCOP2 (2022-06-29) |
| M [auth F] | SCOP2 Family | ND5 antiporter-like subunits | 8059303 | 4005931 | SCOP2 (2022-06-29) |
| M [auth F] | SCOP2 Superfamily | Antiporter subunits half-channel-like | 8059304 | 3002280 | SCOP2 (2022-06-29) |
| M [auth F] | SCOP2 Superfamily | Antiporter subunits half-channel-like | 8093351 | 3002280 | SCOP2 (2022-06-29) |
| D [auth E] | SCOP2 Family | NADH-quinone oxidoreductase NDH subunit 11-like | 8060882 | 4005793 | SCOP2 (2022-06-29) |
| D [auth E] | SCOP2 Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8060883 | 3002200 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | AAA | e6humA1 | A: alpha arrays | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Family A G protein-coupled receptor-like | F: AAA | ECOD (v295.2) |
| B [auth C] | Oxidored_q2 | e6humC1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Oxidored_q2 | ECOD (v295.2) |
| C [auth D] | Oxidored_q2 | e6humD1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Oxidored_q2 | ECOD (v295.2) |
| E [auth B] | Fer4+Fer4_7 | e6humB1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer4+Fer4_7 | ECOD (v295.2) |
| F [auth G] | Fer4+Fer4_7 | e6humG1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer4+Fer4_7 | ECOD (v295.2) |
| I [auth H] | Fer4+Fer4_7 | e6humH1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer4+Fer4_7 | ECOD (v295.2) |
| J [auth I] | Fer4+Fer4_7 | e6humI1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer4+Fer4_7 | ECOD (v295.2) |
| M [auth F] | NdhS | e6humF1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: NdhS | ECOD (v295.2) |
| P [auth S] | NdhS | e6humS1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: NdhS | ECOD (v295.2) |
| Q [auth O] | Ferritin | e6humO1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Ferritin | ECOD (v295.2) |
| G [auth J] | Fer4+Fer4_7 | e6humJ1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer4+Fer4_7 | ECOD (v295.2) |
| D [auth E] | Oxidored_q2 | e6humE1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: Oxidored_q2 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B [auth C] | 1.20.58.1610 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
| F [auth G] | 1.20.120.1200 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | CATH (utative) |
| I [auth H] | 1.10.645.10 | Mainly Alpha | Orthogonal Bundle | Cytochrome-c3 Hydrogenase | chain B | CATH (utative) |
| P [auth S] | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
| D [auth E] | 1.10.287.3510 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex I (NADH dehydrogenase) and supercomplexes | H+ or Na+ translocating NADH dehydrogenase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosynthetic complex I |