6HUM
Structure of the photosynthetic complex I from Thermosynechococcus elongatus
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
M [auth F] | SCOP2 Family | ND5 antiporter-like subunits | 8059303 | 4005931 | SCOP2 (2021-05-27) |
M [auth F] | SCOP2 Superfamily | Antiporter subunits half-channel-like | 8059304 | 3002280 | SCOP2 (2021-05-27) |
M [auth F] | SCOP2 Superfamily | Antiporter subunits half-channel-like | 8093351 | 3002280 | SCOP2 (2021-05-27) |
P [auth S] | SCOP2B Superfamily | Electron transport accessory proteins | 8103000 | 3000325 | SCOP2B (2021-05-27) |
C [auth D] | SCOP2 Family | ND4 antiporter-like subunits | 8059299 | 4005749 | SCOP2 (2021-05-27) |
C [auth D] | SCOP2 Superfamily | Antiporter subunits half-channel-like | 8059300 | 3002280 | SCOP2 (2021-05-27) |
C [auth D] | SCOP2 Superfamily | Antiporter subunits half-channel-like | 8093348 | 3002280 | SCOP2 (2021-05-27) |
D [auth E] | SCOP2 Family | NADH-quinone oxidoreductase NDH subunit 11-like | 8060882 | 4005793 | SCOP2 (2021-05-27) |
D [auth E] | SCOP2 Superfamily | NADH-quinone oxidoreductase subunit 11-like | 8060883 | 3002200 | SCOP2 (2021-05-27) |
I [auth H] | SCOP2 Family | Nqo4-like | 8085740 | 4000433 | SCOP2 (2021-05-27) |
I [auth H] | SCOP2 Superfamily | HydB/Nqo4-like | 8085741 | 3001849 | SCOP2 (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00146 | e6humA1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related | F: PF00146 | ECOD (1.6) |
J [auth I] | PF00037 | e6humI1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
M [auth F] | PF00361,PF00662,PF01010 | e6humF1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: PF00361,PF00662,PF01010 | ECOD (1.6) |
P [auth S] | PF11623 | e6humS1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF11623 | ECOD (1.6) |
Q [auth O] | PF11910 | e6humO1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF11910 | ECOD (1.6) |
B [auth C] | PF00507 | e6humC1 | A: extended segments | X: NADH-quinone oxidoreductase subunit A (From Topology) | H: NADH-quinone oxidoreductase subunit A (From Topology) | T: NADH-quinone oxidoreductase subunit A | F: PF00507 | ECOD (1.6) |
C [auth D] | PF00361 | e6humD1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: PF00361 | ECOD (1.6) |
D [auth E] | PF00420 | e6humE1 | A: alpha complex topology | X: NADH-quinone oxidoreductase subunit K (From Topology) | H: NADH-quinone oxidoreductase subunit K (From Topology) | T: NADH-quinone oxidoreductase subunit K | F: PF00420 | ECOD (1.6) |
E [auth B] | PF00361,PF19530 | e6humB1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: PF00361,PF19530 | ECOD (1.6) |
F [auth G] | PF00499 | e6humG1 | A: extended segments | X: NADH-quinone oxidoreductase subunit J (From Topology) | H: NADH-quinone oxidoreductase subunit J (From Topology) | T: NADH-quinone oxidoreductase subunit J | F: PF00499 | ECOD (1.6) |
G [auth J] | PF00329 | e6humJ1 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: PF00329 | ECOD (1.6) |
I [auth H] | PF00346 | e6humH2 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: PF00346 | ECOD (1.6) |
I [auth H] | PF00346 | e6humH1 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: PF00346 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
P [auth S] | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B [auth C] | 1.20.58.1610 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
D [auth E] | 1.10.287.3510 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (4.3.0) | |
I [auth H] | 1.10.645.10 | Mainly Alpha | Orthogonal Bundle | Cytochrome-c3 Hydrogenase | chain B | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex I (NADH dehydrogenase) and supercomplexes | H+ or Na+ translocating NADH dehydrogenase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosynthetic complex I |