6HJQ
Structure of Full-length Influenza Hemagglutinin (A/duck/Alberta/35/76) in complex with FISW84 Fab Fragment
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8087728 | 3001342 | SCOP2B (2022-06-29) |
I [auth C] | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8087728 | 3001342 | SCOP2B (2022-06-29) |
J [auth E] | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8087728 | 3001342 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Influenza hemagglutinin (stalk) | 8087937 | 4003840 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Influenza hemagglutinin (stalk) | 8087938 | 3001616 | SCOP2 (2022-06-29) |
K [auth D] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8087938 | 3001616 | SCOP2B (2022-06-29) |
L [auth F] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8087938 | 3001616 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Hemagglutinin_1st | e6hjqA1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: Hemagglutinin_1st | ECOD (1.6) |
I [auth C] | Hemagglutinin_1st | e6hjqC1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: Hemagglutinin_1st | ECOD (1.6) |
J [auth E] | Hemagglutinin_1st | e6hjqE1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: Hemagglutinin_1st | ECOD (1.6) |
C [auth G] | C1-set_1 | e6hjqG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth G] | V-set_12 | e6hjqG2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
E [auth I] | C1-set_1 | e6hjqI2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
E [auth I] | V-set_12 | e6hjqI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
F [auth K] | C1-set_1 | e6hjqK2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
F [auth K] | V-set_12 | e6hjqK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
G [auth J] | C1-set_4 | e6hjqJ2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
G [auth J] | V-set | e6hjqJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
D [auth H] | C1-set_4 | e6hjqH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
D [auth H] | V-set | e6hjqH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
H [auth L] | C1-set_4 | e6hjqL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
H [auth L] | V-set | e6hjqL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth G], E [auth I], F [auth K] | Fab FISW84 | VH-CH1 | Homo sapiens (human) | IGHV3-23*01, IGHV3-23D*01, IGHJ1*01, IGHG1*03 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202440-0) |
D [auth H], G [auth J], H [auth L] | Fab FISW84 | L-KAPPA | Homo sapiens (human) | IGKV3-15*01, IGKV3D-15*01, IGKJ5*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202440-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth G], E [auth I], F [auth K] | Heavy Chain | IGHV3 | - | hemagglutinin | hemagglutinin | SAbDab (2024-10-11) |
D [auth H], G [auth J], H [auth L] | Light Chain | IGKV3 | Kappa | hemagglutinin | hemagglutinin | SAbDab (2024-10-11) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, I [auth C], J [auth E] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
B, K [auth D], L [auth F] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, I [auth C], J [auth E] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
A, I [auth C], J [auth E] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
A, I [auth C], J [auth E] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
A, I [auth C], J [auth E] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |
B, K [auth D], L [auth F] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
B, K [auth D], L [auth F] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
B, K [auth D], L [auth F] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
B, K [auth D], L [auth F] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Bitopic proteins | Viral membrane fusion glycoprotein | Hemagglutinin |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Glycoproteins | Influenza Hemagglutinin, full length |