6H16
Structure of LRP6 P3E3P4E4 in complex with VHH L-P2-D07
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d6h16b_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Llama (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SGL_5 | e6h16A2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: SGL_5 | ECOD (1.6) |
A | FXa_inhibition | e6h16A4 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: FXa_inhibition | ECOD (1.6) |
B | V-set_8 | e6h16B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.120.10.30 | Mainly Beta | 6 Propeller | Neuraminidase | TolB, C-terminal domain | CATH (4.3.0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | low-density lipoprotein receptor-related protein 6 | SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14670 | Coagulation Factor Xa inhibitory site (FXa_inhibition) | Coagulation Factor Xa inhibitory site | This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442 [1]. | Domain | |
PF00058 | Low-density lipoprotein receptor repeat class B (Ldl_recept_b) | Low-density lipoprotein receptor repeat class B | - | Repeat | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036055 | LDL receptor-like superfamily | Homologous Superfamily | |
IPR000033 | LDLR class B repeat | Repeat | |
IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | Conserved Site | |
IPR011042 | Six-bladed beta-propeller, TolB-like | Homologous Superfamily | |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | Repeat | |
IPR000742 | EGF-like domain | Domain | |
IPR050778 | Cueball/EGF/LRP/Nidogen | Family | |
IPR017049 | Low density lipoprotein receptor-related protein 5/6 | Family |