Annotations: 6GYB

Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
GA [auth L]	SCOP2 Family	TrbI-like	8100211	4004140	SCOP2 (2022-06-29)
GA [auth L]	SCOP2 Superfamily	TrbI-like	8100212	3002141	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth a]	F420_oxidored	e6gyba1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: F420_oxidored	ECOD (v294.1)
BA [auth G]	Ribosomal_L1	e6gybG1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
D [auth d]	Ribosomal_L1	e6gybd1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
EA [auth J]	Ribosomal_L1	e6gybJ1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
G [auth g]	Ribosomal_L1	e6gybg1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
HA [auth M]	Ribosomal_L1	e6gybM1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
J [auth j]	Ribosomal_L1	e6gybj1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
KA [auth P]	Ribosomal_L1	e6gybP1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
M [auth m]	Ribosomal_L1	e6gybm1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
NA [auth S]	Ribosomal_L1	e6gybS1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
P [auth p]	Ribosomal_L1	e6gybp1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
S [auth s]	Ribosomal_L1	e6gybs1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
V [auth A]	Ribosomal_L1	e6gybA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
Y [auth D]	Ribosomal_L1	e6gybD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
B [auth b]	F420_oxidored	e6gybb1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: F420_oxidored	ECOD (v294.1)
CA [auth H]	Ribosomal_L1	e6gybH1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
E [auth e]	Ribosomal_L1	e6gybe1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
FA [auth K]	Ribosomal_L1	e6gybK1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
H [auth h]	Ribosomal_L1	e6gybh1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
IA [auth N]	Ribosomal_L1	e6gybN1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
K [auth k]	Ribosomal_L1	e6gybk1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
LA [auth Q]	Ribosomal_L1	e6gybQ1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
N [auth n]	Ribosomal_L1	e6gybn1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
OA [auth T]	Ribosomal_L1	e6gybT1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
Q [auth q]	Ribosomal_L1	e6gybq1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
T [auth t]	Ribosomal_L1	e6gybt1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
W [auth B]	Ribosomal_L1	e6gybB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
Z [auth E]	Ribosomal_L1	e6gybE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
AA [auth F]	Ribosomal_L1	e6gybF1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
C [auth c]	F420_oxidored	e6gybc1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: F420_oxidored	ECOD (v294.1)
DA [auth I]	Ribosomal_L1	e6gybI1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
F [auth f]	Ribosomal_L1	e6gybf1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
GA [auth L]	Ribosomal_L1	e6gybL1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
I [auth i]	Ribosomal_L1	e6gybi1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
JA [auth O]	Ribosomal_L1	e6gybO1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
L [auth l]	Ribosomal_L1	e6gybl1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
MA [auth R]	Ribosomal_L1	e6gybR1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
O [auth o]	Ribosomal_L1	e6gybo1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
PA [auth U]	Ribosomal_L1	e6gybU1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
R [auth r]	Ribosomal_L1	e6gybr1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
U [auth u]	Ribosomal_L1	e6gybu1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)
X [auth C]	Ribosomal_L1	e6gybC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Ribosomal_L1	ECOD (v294.1)

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6GYB | pdb_00006gyb

Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage