6GGR
Crystal structure of Salmonella zinc metalloprotease effector GtgA in complex with p65
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6ggra1 | All beta proteins | Common fold of diphtheria toxin/transcription factors/cytochrome f | p53-like transcription factors | Rel/Dorsal transcription factors, DNA-binding domain | p65 subunit of NF-kappa B (NFKB), N-terminal domain | House Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d6ggra2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | House Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RHD_DNA_bind | e6ggrA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: RHD_DNA_bind | ECOD (1.6) |
B | UNK_F_TYPE | e6ggrB1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.340 | Mainly Beta | Sandwich | Immunoglobulin-like | Rel homology domain (RHD), DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00554 | Rel homology DNA-binding domain (RHD_DNA_bind) | Rel homology DNA-binding domain | Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immu ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR033926 | NFkappaB IPT domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR011539 | Rel homology domain, DNA-binding domain | Domain | |
IPR030495 | Transcription factor p65, RHD domain, N-terminal | Domain | |
IPR002909 | IPT domain | Domain | |
IPR030492 | Rel homology domain, conserved site | Conserved Site | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR037059 | Rel homology domain (RHD), DNA-binding domain superfamily | Homologous Superfamily | |
IPR008967 | p53-like transcription factor, DNA-binding domain superfamily | Homologous Superfamily | |
IPR000451 | NF-kappa-B/Dorsal | Family | |
IPR032397 | Rel homology dimerisation domain | Domain | |
IPR010777 | PipA | Family |