Crystal structure of the omega transaminase from Pseudomonas jessenii in the apo form, crystallized from ammonium phosphate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d6g4cb1 | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Pseudomonas sp. ) [TaxId: 306 ], | SCOPe (2.08) |
| B | d6g4cb2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Pseudomonas sp. ) [TaxId: 306 ], | SCOPe (2.08) |
| A | d6g4ca1 | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Pseudomonas sp. ) [TaxId: 306 ], | SCOPe (2.08) |
| A | d6g4ca2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Pseudomonas sp. ) [TaxId: 306 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | PLP-dependent transferases | 8107076 | 3000954 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | GABA-aminotransferase-like | 8094884 | 4000675 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | PLP-dependent transferases | 8094885 | 3000954 | SCOP2 (2022-06-29) |
| A | SCOP2B Superfamily | PLP-dependent transferases | 8107076 | 3000954 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | DNA_pol_A_exo1 | e6g4cB1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Rubredoxin-related | T: Aconitase iron-sulfur domain | F: DNA_pol_A_exo1 | ECOD (v295.2) |
| A | DNA_pol_A_exo1 | e6g4cA1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Rubredoxin-related | T: Aconitase iron-sulfur domain | F: DNA_pol_A_exo1 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.90.1150.10 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | Aspartate Aminotransferase, domain 1 | CATH (utative) |
| B | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (utative) |
| A | 3.90.1150.10 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | Aspartate Aminotransferase, domain 1 | CATH (utative) |
| A | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (utative) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR049704 | Aminotransferases class-III pyridoxal-phosphate attachment site | Conserved Site | |
| IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
| IPR005814 | Aminotransferase class-III | Family | |
| IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
| IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily |