Annotations: 6G1F

Crystal structure of D-phenylglycine aninotransferase (D-PhgAT) from Pseudomonas stutzeri with PLP internal aldimine

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d6g1ff1	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
F	d6g1ff2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
E	d6g1fe1	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
E	d6g1fe2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
D	d6g1fd1	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
D	d6g1fd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
C	d6g1fc_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
B	d6g1fb1	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
B	d6g1fb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
A	d6g1fa1	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
A	d6g1fa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	PLP-dependent transferases	8099852	3000954	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PLP-dependent transferases	8099852	3000954	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PLP-dependent transferases	8099852	3000954	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PLP-dependent transferases	8099852	3000954	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PLP-dependent transferases	8099852	3000954	SCOP2B (2022-06-29)
A	SCOP2 Family	GABA-aminotransferase-like	8099851	4000675	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PLP-dependent transferases	8099852	3000954	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	DNA_pol_A_exo1	e6g1fF1	A: alpha arrays	X: PriB N-terminal domain-like	H: Rubredoxin-related	T: Aconitase iron-sulfur domain	F: DNA_pol_A_exo1	ECOD (v295.2)
E	DNA_pol_A_exo1	e6g1fE1	A: alpha arrays	X: PriB N-terminal domain-like	H: Rubredoxin-related	T: Aconitase iron-sulfur domain	F: DNA_pol_A_exo1	ECOD (v295.2)
D	DNA_pol_A_exo1	e6g1fD1	A: alpha arrays	X: PriB N-terminal domain-like	H: Rubredoxin-related	T: Aconitase iron-sulfur domain	F: DNA_pol_A_exo1	ECOD (v295.2)
C	DNA_pol_A_exo1	e6g1fC1	A: alpha arrays	X: PriB N-terminal domain-like	H: Rubredoxin-related	T: Aconitase iron-sulfur domain	F: DNA_pol_A_exo1	ECOD (v295.2)
B	DNA_pol_A_exo1	e6g1fB1	A: alpha arrays	X: PriB N-terminal domain-like	H: Rubredoxin-related	T: Aconitase iron-sulfur domain	F: DNA_pol_A_exo1	ECOD (v295.2)
A	PRK	e6g1fA1	A: alpha arrays	X: PriB N-terminal domain-like	H: Rubredoxin-related	T: Aconitase iron-sulfur domain	F: PRK	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.90.1150.10	Alpha Beta	Alpha-Beta Complex	Aspartate Aminotransferase, domain 1	Aspartate Aminotransferase, domain 1	CATH (utative)
F	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (utative)
E	3.90.1150.10	Alpha Beta	Alpha-Beta Complex	Aspartate Aminotransferase, domain 1	Aspartate Aminotransferase, domain 1	CATH (utative)
E	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (utative)
D	3.90.1150.10	Alpha Beta	Alpha-Beta Complex	Aspartate Aminotransferase, domain 1	Aspartate Aminotransferase, domain 1	CATH (utative)
D	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (utative)
C	3.90.1150.10	Alpha Beta	Alpha-Beta Complex	Aspartate Aminotransferase, domain 1	Aspartate Aminotransferase, domain 1	CATH (utative)
C	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (utative)
B	3.90.1150.10	Alpha Beta	Alpha-Beta Complex	Aspartate Aminotransferase, domain 1	Aspartate Aminotransferase, domain 1	CATH (utative)
B	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (utative)
A	3.90.1150.10	Alpha Beta	Alpha-Beta Complex	Aspartate Aminotransferase, domain 1	Aspartate Aminotransferase, domain 1	CATH (utative)
A	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	D-phenylglycine aminotransferase	vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR049704	Aminotransferases class-III pyridoxal-phosphate attachment site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR005814	Aminotransferase class-III	Family
A, B, C, D, E A, B, C, D, E, F	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E A, B, C, D, E, F	LLP	Parent Component: LYS : AA0119 : N6-pyridoxal phosphate-L-lysine MOD:00128