6FT6
Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth B] | SCOP2B Superfamily | Translational proteins | 8078363 | 3000811 | SCOP2B (2021-05-27) |
D [auth C] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052815 | 3002143 | SCOP2B (2021-05-27) |
D [auth C] | SCOP2B Superfamily | Ribosomal protein L4 | 8052816 | 3001146 | SCOP2B (2021-05-27) |
E [auth D] | SCOP2B Superfamily | Translational machinery components | 8052875 | 3000571 | SCOP2B (2021-05-27) |
F [auth E] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053109 | 3000334 | SCOP2B (2021-05-27) |
G [auth F] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052917 | 3001378 | SCOP2B (2021-05-27) |
G [auth F] | SCOP2B Superfamily | Ribosomal L30p/L7e protein N-terminal domain-lke | 8052916 | 3002152 | SCOP2B (2021-05-27) |
K [auth J] | SCOP2B Superfamily | RL5-like | 8073884 | 3001709 | SCOP2B (2021-05-27) |
L | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053159 | 3002162 | SCOP2B (2021-05-27) |
N | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8082481 | 3000210 | SCOP2B (2021-05-27) |
O | SCOP2B Superfamily | Ribosomal protein L13 | 8066053 | 3001134 | SCOP2B (2021-05-27) |
P | SCOP2B Superfamily | Ribosomal protein L22 | 8076708 | 3001078 | SCOP2B (2021-05-27) |
Q | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095970 | 3001045 | SCOP2B (2021-05-27) |
R | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8077485 | 3000890 | SCOP2B (2021-05-27) |
U | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053058 | 3002158 | SCOP2B (2021-05-27) |
V | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8102130 | 3000433 | SCOP2B (2021-05-27) |
X | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8095962 | 3000210 | SCOP2B (2021-05-27) |
Y | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076760 | 3000334 | SCOP2B (2021-05-27) |
Z | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053046 | 3000334 | SCOP2B (2021-05-27) |
CA [auth c] | SCOP2B Superfamily | L30e-like | 8039862 | 3001739 | SCOP2B (2021-05-27) |
FA [auth f] | SCOP2B Superfamily | Translational proteins | 8087451 | 3000811 | SCOP2B (2021-05-27) |
GA [auth g] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053547 | 3002203 | SCOP2B (2021-05-27) |
IA [auth i] | SCOP2B Superfamily | Ribosomal protein L36e | 8053115 | 3002161 | SCOP2B (2021-05-27) |
KA [auth k] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053562 | 3002206 | SCOP2B (2021-05-27) |
LA [auth l] | SCOP2B Superfamily | Ribosomal protein L39e | 8078549 | 3001756 | SCOP2B (2021-05-27) |
OA [auth p] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8103126 | 3001320 | SCOP2B (2021-05-27) |
SA [auth v] | SCOP2B Superfamily | Class II aaRS ABD-related | 8092352 | 3000465 | SCOP2B (2021-05-27) |
SA [auth v] | SCOP2B Superfamily | Class II aaRS ABD-related | 8092351 | 3000465 | SCOP2B (2021-05-27) |
TA [auth w] | SCOP2B Superfamily | Rrs1-like | 8092359 | 3002595 | SCOP2B (2021-05-27) |
VA [auth y] | SCOP2B Superfamily | Pentein | 8036230 | 3000640 | SCOP2B (2021-05-27) |
BB [auth KK] | SCOP2B Superfamily | Rrp6-Rrp47 interacting regions-like | 8055988 | 3002328 | SCOP2B (2021-05-27) |
CB [auth LL] | SCOP2B Superfamily | Rrp6-Rrp47 interacting regions-like | 8055987 | 3002328 | SCOP2B (2021-05-27) |
JA [auth j] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8080044 | 3001320 | SCOP2B (2021-05-27) |
H [auth G] | SCOP2B Superfamily | L30e-like | 8063962 | 3001739 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | PF00181 | e6ft6A1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
B [auth A] | PF03947 | e6ft6A2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
C [auth B] | PF00297 | e6ft6B1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
D [auth C] | PF00573 | e6ft6C3 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
D [auth C] | PF14374 | e6ft6C2 | A: extended segments | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: PF14374 | ECOD (1.6) |
E [auth D] | PF14204,PF17144 | e6ft6D1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF14204,PF17144 | ECOD (1.6) |
F [auth E] | PF01159 | e6ft6E1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01159 | ECOD (1.6) |
G [auth F] | PF00327,PF08079 | e6ft6F1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327,PF08079 | ECOD (1.6) |
I [auth H] | PF00347 | e6ft6H2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
J [auth I] | PF12171 | e6ft6I1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF12171 | ECOD (1.6) |
K [auth J] | PF00281,PF00673 | e6ft6J1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
L | PF01294 | e6ft6L1 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: PF01294 | ECOD (1.6) |
M | PF00467,PF01929 | e6ft6M1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01929 | ECOD (1.6) |
N | PF00827 | e6ft6N1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00827 | ECOD (1.6) |
O | PF00572 | e6ft6O1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
P | PF00237 | e6ft6P1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
Q | PF17135 | e6ft6Q1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF17135 | ECOD (1.6) |
R | PF01280 | e6ft6R2 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: PF01280 | ECOD (1.6) |
R | PF01280 | e6ft6R1 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: PF01280 | ECOD (1.6) |
S | F_UNCLASSIFIED | e6ft6S2 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: F_UNCLASSIFIED | ECOD (1.6) |
S | PF01775 | e6ft6S1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: PF01775 | ECOD (1.6) |
T | PF01157 | e6ft6T1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01157 | ECOD (1.6) |
U | PF01776 | e6ft6U1 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: PF01776 | ECOD (1.6) |
V | PF00238 | e6ft6V1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
W | PF00466 | e6ft6W2 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: PF00466 | ECOD (1.6) |
W | PF17777 | e6ft6W1 | A: a+b two layers | X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | T: Insertion domain in 60S ribosomal protein rpP0 (L10P) | F: PF17777 | ECOD (1.6) |
X | PF00276,PF03939 | e6ft6X1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276,PF03939 | ECOD (1.6) |
Y | PF16906 | e6ft6Y1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16906 | ECOD (1.6) |
Z | PF01777 | e6ft6Z1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01777 | ECOD (1.6) |
AA [auth a] | PF00828 | e6ft6a1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
CA [auth c] | PF01248 | e6ft6c1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
DA [auth d] | PF01198 | e6ft6d1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF01198 | ECOD (1.6) |
EA [auth e] | PF01655 | e6ft6e1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: PF01655 | ECOD (1.6) |
FA [auth f] | PF01247 | e6ft6f1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF01247 | ECOD (1.6) |
GA [auth g] | PF01199 | e6ft6g1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: PF01199 | ECOD (1.6) |
HA [auth h] | PF00831 | e6ft6h1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
IA [auth i] | PF01158 | e6ft6i1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: PF01158 | ECOD (1.6) |
KA [auth k] | PF01781 | e6ft6k1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF01781 | ECOD (1.6) |
LA [auth l] | PF00832 | e6ft6l1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: PF00832 | ECOD (1.6) |
OA [auth p] | PF01780 | e6ft6p1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01780 | ECOD (1.6) |
UA [auth x] | PF00400 | e6ft6x2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
UA [auth x] | PF08154 | e6ft6x1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF08154 | ECOD (1.6) |
VA [auth y] | PF01912 | e6ft6y1 | A: a+b duplicates or obligate multimers | X: Pentein (From Topology) | H: Pentein (From Topology) | T: Pentein | F: PF01912 | ECOD (1.6) |
BB [auth KK] | PF08066 | e6ft6KK1 | A: extended segments | X: Exosome complex exonuclease RRP6 N-terminal domain (From Topology) | H: Exosome complex exonuclease RRP6 N-terminal domain (From Topology) | T: Exosome complex exonuclease RRP6 N-terminal domain | F: PF08066 | ECOD (1.6) |
CB [auth LL] | PF04000 | e6ft6LL1 | A: extended segments | X: Exosome complex protein LRP1 (From Topology) | H: Exosome complex protein LRP1 (From Topology) | T: Exosome complex protein LRP1 | F: PF04000 | ECOD (1.6) |
DB [auth MM] | PF13234 | e6ft6MM5 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF13234 | ECOD (1.6) |
DB [auth MM] | F_UNCLASSIFIED | e6ft6MM4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
DB [auth MM] | PF08148 | e6ft6MM1 | A: alpha arrays | X: Sec63 N-terminal subdomain-like (From Topology) | H: Sec63 N-terminal subdomain-like (From Topology) | T: Sec63 N-terminal subdomain-like | F: PF08148 | ECOD (1.6) |
DB [auth MM] | PF00270 | e6ft6MM3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00270 | ECOD (1.6) |
DB [auth MM] | PF00271 | e6ft6MM6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00271 | ECOD (1.6) |
DB [auth MM] | PF13234 | e6ft6MM2 | A: extended segments | X: Helical arch in Ski2-like helicases (From Topology) | H: Helical arch in Ski2-like helicases (From Topology) | T: Helical arch in Ski2-like helicases | F: PF13234 | ECOD (1.6) |
JA [auth j] | PF01907 | e6ft6j1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01907 | ECOD (1.6) |
H [auth G] | PF01248 | e6ft6G1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
B [auth A] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
C [auth B] | PF17835 | NOG1 N-terminal helical domain (NOG1_N) | NOG1 N-terminal helical domain | This domain is found at the N-terminus of NOG1 GTPase proteins. | Domain |
C [auth B] | PF06858 | Nucleolar GTP-binding protein 1 (NOG1) (NOG1) | Nucleolar GTP-binding protein 1 (NOG1) | - | Family |
D [auth C] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
D [auth C] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
E [auth D] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
E [auth D] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
E [auth D] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
F [auth E] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
F [auth E] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
G [auth F] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
G [auth F] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
I [auth H] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
I [auth H] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
J [auth I] | PF12171 | Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz) | Zinc-finger double-stranded RNA-binding | - | Family |
J [auth I] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
K [auth J] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
K [auth J] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
K [auth J] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family | |
PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family | |
PF08153 | NGP1NT (NUC091) domain (NGP1NT) | NGP1NT (NUC091) domain | This N terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [1]. | Domain | |
PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family | |
PF00467 | KOW motif (KOW) | KOW motif | - | Family | |
PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family | |
PF06732 | Pescadillo N-terminus (Pescadillo_N) | Pescadillo N-terminus | - | Family | |
PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family | |
PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain | |
PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family | |
PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family | |
PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family | |
PF08701 | GNL3L/Grn1 putative GTPase (GN3L_Grn1) | GNL3L/Grn1 putative GTPase | - | Family | |
PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain | |
PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain | |
PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family | |
PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain | |
PF04427 | Brix domain (Brix) | Brix domain | - | Domain | |
PF04939 | Ribosome biogenesis regulatory protein (RRS1) (RRS1) | Ribosome biogenesis regulatory protein (RRS1) | - | Family | |
PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain | |
PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family | |
PF08154 | NLE (NUC135) domain (NLE) | NLE (NUC135) domain | This domain is located N terminal to WD40 repeats. It is found in the microtubule-associated protein Swiss:Q12024 [1]. | Domain | |
PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF01912 | eIF-6 family (eIF-6) | eIF-6 family | - | Family | |
PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family | |
PF00467 | KOW motif (KOW) | KOW motif | - | Family | |
PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family | |
BB [auth KK] | PF08066 | PMC2NT (NUC016) domain (PMC2NT) | PMC2NT (NUC016) domain | This domain is found at the N-terminus of 3'-5' exonucleases with HRDC domains, and also in putative exosome components [1]. | Domain |
CB [auth LL] | PF04000 | Sas10/Utp3/C1D family (Sas10_Utp3) | Sas10/Utp3/C1D family | - | Family |
DB [auth MM] | PF08148 | DSHCT (NUC185) domain (DSHCT) | DSHCT (NUC185) domain | This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [1]. | Domain |
DB [auth MM] | PF00270 | DEAD/DEAH box helicase (DEAD) | DEAD/DEAH box helicase | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ... | Domain |
DB [auth MM] | PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain |
DB [auth MM] | PF21408 | Exosome RNA helicase MTR4-like, stalk (MTR4-like_stalk) | Exosome RNA helicase MTR4-like, stalk | Exosome RNA helicase MTR4 is a conserved RNA helicase that functions together with the nuclear exosome and it is involved in processing of structured RNAs, including snRNAs and snoRNAs. It also plays a role in nuclear RNA surveillance pathways involv ... | Domain |
DB [auth MM] | PF13234 | Mtr4-like, beta-barrel domain (MTR4_beta-barrel) | Mtr4-like, beta-barrel domain | Exosome RNA helicase Mtr4 is a essential RNA helicase, and is an exosome-activating cofactor. It functions together with the nuclear exosome being involved in processing of structured RNAs, including snRNAs and snoRNAs. It also plays a role in nuclea ... | Domain |
H [auth G] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |