6FO1
Human R2TP subcomplex containing 1 RUVBL1-RUVBL2 hexamer bound to 1 RBD domain from RPAP3.
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG1942_like | e6fo1A2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG1942_like | ECOD (1.6) |
A | TIP49_3rd | e6fo1A3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: TIP49_3rd | ECOD (1.6) |
A | AAA_11_1 | e6fo1A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
B | KOG1942_like | e6fo1B2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG1942_like | ECOD (1.6) |
B | TIP49_3rd | e6fo1B3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: TIP49_3rd | ECOD (1.6) |
B | AAA_11_1 | e6fo1B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
C | KOG1942_like | e6fo1C1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG1942_like | ECOD (1.6) |
C | TIP49_3rd | e6fo1C2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: TIP49_3rd | ECOD (1.6) |
C | AAA_11_1 | e6fo1C3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
D | KOG2680_like,TIP49_3rd_1 | e6fo1D2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG2680_like,TIP49_3rd_1 | ECOD (1.6) |
D | AAA_11_1 | e6fo1D1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
E | KOG2680_like,TIP49_3rd_1 | e6fo1E1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG2680_like,TIP49_3rd_1 | ECOD (1.6) |
E | AAA_11_1 | e6fo1E2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
F | KOG2680_like,TIP49_3rd_1 | e6fo1F2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG2680_like,TIP49_3rd_1 | ECOD (1.6) |
F | AAA_11_1 | e6fo1F1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
G | EUF07655 | e6fo1G1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: RPAP3 C-terminal domain-like (From Topology) | T: RPAP3 C-terminal domain-like | F: EUF07655 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06068 | TIP49 P-loop domain (TIP49) | TIP49 P-loop domain | This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ... | Domain | |
PF17856 | TIP49 AAA-lid domain (TIP49_C) | TIP49 AAA-lid domain | This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ... | Domain | |
PF17856 | TIP49 AAA-lid domain (TIP49_C) | TIP49 AAA-lid domain | This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ... | Domain | |
PF13877 | Potential Monad-binding region of RPAP3 (RPAP3_C) | Potential Monad-binding region of RPAP3 | This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010339 | TIP49, P-loop domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR041048 | RuvB-like, AAA-lid domain | Domain | |
IPR042487 | RuvBL1/2, DNA/RNA binding domain | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR027238 | RuvB-like | Family | |
IPR010339 | TIP49, P-loop domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR041048 | RuvB-like, AAA-lid domain | Domain | |
IPR042487 | RuvBL1/2, DNA/RNA binding domain | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR027238 | RuvB-like | Family | |
IPR051966 | RNA polymerase II-associated protein 3 | Family | |
IPR025986 | RNA-polymerase II-associated protein 3-like, C-terminal domain | Domain | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
IPR019734 | Tetratricopeptide repeat | Repeat |