Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 1]SCOP2B SuperfamilyRNA-binding domain, RBD 8061967 3000110 SCOP2B (2022-06-29)
J [auth C]SCOP2B SuperfamilyPre-mRNA-processing protein 45-like 8092740 3002618 SCOP2B (2022-06-29)
M [auth L]SCOP2B SuperfamilyHomeodomain-like 8089608 3000001 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyRNA-binding domain, RBD 8064957 3000110 SCOP2B (2022-06-29)
Q [auth R]SCOP2 FamilyCwf15/Cwc15-like 8103705 4005200 SCOP2 (2022-06-29)
Q [auth R]SCOP2 SuperfamilyCwf15/Cwc15-like 8103706 3002807 SCOP2 (2022-06-29)
S [auth V]SCOP2B SuperfamilyCyclophilin-like 8033930 3000168 SCOP2B (2022-06-29)
T [auth Y]SCOP2B SuperfamilyPWI domain 8036462 3000964 SCOP2B (2022-06-29)
V [auth s]SCOP2B SuperfamilyCyclophilin-like 8065083 3000168 SCOP2B (2022-06-29)
Y [auth v]SCOP2B SuperfamilyWD40 repeat-like 8052534 3001694 SCOP2B (2022-06-29)
Y [auth v]SCOP2B SuperfamilyWD40 repeat-like 8052535 3001694 SCOP2B (2022-06-29)
Y [auth v]SCOP2B SuperfamilyWD40 repeat-like 8051197 3001694 SCOP2B (2022-06-29)
Y [auth v]SCOP2B SuperfamilyWD40 repeat-like 8052534 3001694 SCOP2B (2022-06-29)
AA [auth y]SCOP2B SuperfamilyTriquetra zinc finger motif 8051848 3002040 SCOP2B (2022-06-29)
BA [auth z]SCOP2B SuperfamilyRNA-binding domain, RBD 8040695 3000110 SCOP2B (2022-06-29)
H [auth A]SCOP2B SuperfamilyRibonuclease H-like 8041105 3000143 SCOP2B (2022-06-29)
H [auth A]SCOP2B SuperfamilyJAB1/MPN domain-like 8053277 3001105 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]RRM_1_4e6ff411 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_4ECOD (1.6)
K [auth D]ANAPC4_WD40_11e6ff4D1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_11ECOD (1.6)
M [auth L]Myb_DNA-binding_1e6ff4L1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Myb_DNA-binding_1ECOD (1.6)
N [auth O]TPR_11_6e6ff4O1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_6ECOD (1.6)
O [auth P]RRM_1_6e6ff4P2 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)
O [auth P]KOG0153e6ff4P3 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: FYVE/PHD zinc fingerF: KOG0153ECOD (1.6)
O [auth P]Toruse6ff4P1 A: few secondary structure elementsX: CCCH zinc fingerH: CCCH zinc finger (From Topology)T: CCCH zinc fingerF: TorusECOD (1.6)
P [auth Q]G10e6ff4Q1 A: few secondary structure elementsX: Pre-mRNA-splicing factor BUD31 (From Topology)H: Pre-mRNA-splicing factor BUD31 (From Topology)T: Pre-mRNA-splicing factor BUD31F: G10ECOD (1.6)
S [auth V]Pro_isomerasee6ff4V1 A: beta barrelsX: Cyclophilin-like (From Topology)H: Cyclophilin-like (From Topology)T: Cyclophilin-likeF: Pro_isomeraseECOD (1.6)
T [auth Y]PWIe6ff4Y1 A: alpha arraysX: PWI domain-likeH: PWI domain (From Topology)T: PWI domainF: PWIECOD (1.6)
V [auth s]Pro_isomerasee6ff4s1 A: beta barrelsX: Cyclophilin-like (From Topology)H: Cyclophilin-like (From Topology)T: Cyclophilin-likeF: Pro_isomeraseECOD (1.6)
X [auth u]KOG0213e6ff4u1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG0213ECOD (1.6)
Y [auth v]CPSF_A_Ne6ff4v4 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
Y [auth v]MMS1_N_Ce6ff4v2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_CECOD (1.6)
Y [auth v]MMS1_N_Ne6ff4v3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
Y [auth v]CPSF_A_Ce6ff4v1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)
Z [auth x]SF3b10e6ff4x1 A: alpha arraysX: RDS3 complex subunit 10 (From Topology)H: RDS3 complex subunit 10 (From Topology)T: RDS3 complex subunit 10F: SF3b10ECOD (1.6)
AA [auth y]PHF5e6ff4y1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: PHD finger-like domain-containing protein 5AF: PHF5ECOD (1.6)
BA [auth z]RRM_1_2e6ff4z1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_2ECOD (1.6)
F [auth 7]zf-met_1e6ff471 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: zf-met_1ECOD (1.6)
H [auth A]U5_2-snRNA_bdge6ff4A6 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: U5_2-snRNA_bdgECOD (1.6)
H [auth A]PROCN_C,PROCN_Ne6ff4A1 A: alpha complex topologyX: Pre-mRNA-splicing factor 8 N-terminal domain (From Topology)H: Pre-mRNA-splicing factor 8 N-terminal domain (From Topology)T: Pre-mRNA-splicing factor 8 N-terminal domainF: PROCN_C,PROCN_NECOD (1.6)
H [auth A]RRM_4e6ff4A3 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: RRM_4ECOD (1.6)
H [auth A]PROCTe6ff4A5 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: PROCTECOD (1.6)
H [auth A]U6-snRNA_bdge6ff4A2 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: U6-snRNA_bdgECOD (1.6)
H [auth A]PRP8_domainIVe6ff4A4 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PRP8_domainIVECOD (1.6)
I [auth B]GTP_EFTU_D2_2e6ff4B1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_2ECOD (1.6)
I [auth B]EFG_IVe6ff4B5 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: EFG_IVECOD (1.6)
I [auth B]EFG_Ce6ff4B4 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: EFG_CECOD (1.6)
I [auth B]EFG_IIe6ff4B3 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: EFG_IIECOD (1.6)
I [auth B]MnmE_helical_2nde6ff4B2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
S [auth V]2.40.100.10 Mainly Beta Beta Barrel Cyclophilin Cyclophilin-likeCATH (4.3.0)
T [auth Y]1.20.1390.10 Mainly Alpha Up-down Bundle PWI domain PWI domainCATH (4.3.0)
V [auth s]2.40.100.10 Mainly Beta Beta Barrel Cyclophilin Cyclophilin-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 1]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
J [auth C]PF02731SKIP/SNW domain (SKIP_SNW)SKIP/SNW domain- Family
K [auth D]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
M [auth L]PF13921Myb-like DNA-binding domain (Myb_DNA-bind_6)Myb-like DNA-binding domainThis family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].Domain
N [auth O]PF02184HAT (Half-A-TPR) repeat (HAT)HAT (Half-A-TPR) repeat- Repeat
O [auth P]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
O [auth P]PF21369STL11, N-terminal (STL11_N)STL11, N-terminalThis entry represents the N-terminal domain of STL11 from yeast and its homologues [1-4], such as RBM22 from human. This domain comprises a zinc finger, FYVE/PHD type. Members of this entry are involved in pre-mRNA splicing.Domain
R [auth S]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
S [auth V]PF10433Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N)Mono-functional DNA-alkylating methyl methanesulfonate N-term- Repeat
S [auth V]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
T [auth Y]PF01480PWI domain (PWI)PWI domain- Family
U [auth Z]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
F [auth 7]PF12874Zinc-finger of C2H2 type (zf-met)Zinc-finger of C2H2 typeThis is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.Domain
G [auth 8]PF04037Domain of unknown function (DUF382) (DUF382)Domain of unknown function (DUF382)- Family
H [auth A]PF10597U5-snRNA binding site 2 of PrP8 (U5_2-snRNA_bdg)U5-snRNA binding site 2 of PrP8The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis [1]. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that ...The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis [1]. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [2].
Domain
H [auth A]PF10598RNA recognition motif of the spliceosomal PrP8 (RRM_4)RNA recognition motif of the spliceosomal PrP8The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing. One of the most conserved core proteins is PrP8 which occupies a central position in the catalytic core of the spliceosome, and has been implicated in several crucial molec ...The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing. One of the most conserved core proteins is PrP8 which occupies a central position in the catalytic core of the spliceosome, and has been implicated in several crucial molecular rearrangements that occur there, and has recently come under the spotlight for its role in the inherited human disease, Retinitis Pigmentosa [1]. The RNA-recognition motif of PrP8 is highly conserved and provides a possible RNA binding centre for the 5-prime SS, BP, or 3-prime SS of pre-mRNA which are known to contact with Prp8. The most conserved regions of an RRM are defined as the RNP1 and RNP2 sequences. Recognition of RNA targets can also be modulated by a number of other factors, most notably the two loops beta1-alpha1, beta2-beta3 and the amino acid residues C-terminal to the RNP2 domain [2].
Domain
H [auth A]PF10596U6-snRNA interacting domain of PrP8 (U6-snRNA_bdg)U6-snRNA interacting domain of PrP8This domain incorporates the interacting site for the U6-snRNA as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, and is the prime candidate for the role of cofactor for the spliceosome's RNA core. The essential spliceosomal protein Prp8 ...This domain incorporates the interacting site for the U6-snRNA as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, and is the prime candidate for the role of cofactor for the spliceosome's RNA core. The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [1].
Domain
H [auth A]PF12134PRP8 domain IV core (PRP8_domainIV)PRP8 domain IV coreThis domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The dom ...This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core.
Domain
H [auth A]PF08082PRO8NT (NUC069), PrP8 N-terminal domain (PRO8NT)PRO8NT (NUC069), PrP8 N-terminal domainThe PRO8NT domain is found at the N-terminus of pre-mRNA splicing factors of PRO8 family [1]. The NLS or nuclear localisation signal for these spliceosome proteins begins at the start and runs for 60 residues. N-terminal to this domain is a highly va ...The PRO8NT domain is found at the N-terminus of pre-mRNA splicing factors of PRO8 family [1]. The NLS or nuclear localisation signal for these spliceosome proteins begins at the start and runs for 60 residues. N-terminal to this domain is a highly variable proline-rich region [4].
Domain
H [auth A]PF08083PROCN (NUC071) domain (PROCN)PROCN (NUC071) domainThe PROCN domain is the central domain in pre-mRNA splicing factors of PRO8 family [1].Domain
H [auth A]PF08084PROCT (NUC072) domain (PROCT)PROCT (NUC072) domainThe PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [1].Domain
H [auth A]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin protease- Family
I [auth B]PF00679Elongation factor G C-terminus (EFG_C)Elongation factor G C-terminusThis domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.Domain
I [auth B]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
I [auth B]PF14492Elongation Factor G, domain III (EFG_III)Elongation Factor G, domain IIIThis domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1].Domain
I [auth B]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
I [auth B]PF03764Elongation factor G, domain IV (EFG_IV)Elongation factor G, domain IVThis domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]RNA-binding motif protein, X-linked 2
J [auth C]SNW domain-containing protein 1
K [auth D]Pleiotropic regulator 1-
L [auth E]Pre-mRNA-processing factor 17
M [auth L]Cell division cycle 5-like protein
N [auth O]Crooked neck-like protein 1
O [auth P]Pre-mRNA-splicing factor RBM22
P [auth Q]Protein BUD31 homolog
Q [auth R]Spliceosome-associated protein CWC15 homolog
R [auth S]Serine/arginine repetitive matrix protein 2
S [auth V]Peptidyl-prolyl cis-trans isomerase-like 1
B [auth 2]U2 snRNA---
T [auth Y]Serine/arginine repetitive matrix protein 1
U [auth Z]pre mRNA---
V [auth s]Peptidyl-prolyl cis-trans isomerase CWC27 homolog-
W [auth t]RING finger protein 113A
X [auth u]Splicing factor 3B subunit 1
Y [auth v]Splicing factor 3B subunit 3
Z [auth x]Splicing factor 3B subunit 5
AA [auth y]PHD finger-like domain-containing protein 5A
BA [auth z]Splicing factor 3B subunit 6
C [auth 3]BUD13 homolog
D [auth 5]U5 snRNA---
E [auth 6]U6 snRNA---
F [auth 7]Splicing factor 3A subunit 2
G [auth 8]Splicing factor 3B subunit 2
H [auth A]Pre-mRNA-processing-splicing factor 8
I [auth B]116 kDa U5 small nuclear ribonucleoprotein component

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 1]IPR051847RNA Processing and Spliceosome ComponentFamily
A [auth 1]IPR000504RNA recognition motif domainDomain
A [auth 1]IPR045844Ist3-like, RNA recognition motifDomain
A [auth 1]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
A [auth 1]IPR035979RNA-binding domain superfamilyHomologous Superfamily
J [auth C]IPR017862SKI-interacting protein, SKIPFamily
J [auth C]IPR004015SKI-interacting protein SKIP, SNW domainDomain
K [auth D]IPR019775WD40 repeat, conserved siteConserved Site
K [auth D]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
K [auth D]IPR045241WD repeat Prp46/PLRG1-likeFamily
K [auth D]IPR001680WD40 repeatRepeat
K [auth D]IPR020472G-protein beta WD-40 repeatRepeat
K [auth D]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
L [auth E]IPR019775WD40 repeat, conserved siteConserved Site
L [auth E]IPR032847Pre-mRNA-processing factor 17Family
L [auth E]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
L [auth E]IPR001680WD40 repeatRepeat
L [auth E]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
M [auth L]IPR047240Pre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domainDomain
M [auth L]IPR017930Myb domainDomain
M [auth L]IPR047242Pre-mRNA splicing factor component CDC5L/Cef1Family
M [auth L]IPR009057Homedomain-like superfamilyHomologous Superfamily
M [auth L]IPR001005SANT/Myb domainDomain
M [auth L]IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminalDomain
N [auth O]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
N [auth O]IPR003107HAT (Half-A-TPR) repeatRepeat
N [auth O]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
O [auth P]IPR036855Zinc finger, CCCH-type superfamilyHomologous Superfamily
O [auth P]IPR039171Pre-mRNA-splicing factor Cwc2/Slt11Family
O [auth P]IPR000504RNA recognition motif domainDomain
O [auth P]IPR000571Zinc finger, CCCH-typeDomain
O [auth P]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
O [auth P]IPR048995STL11/RBM22-like, N-terminal domainDomain
O [auth P]IPR035979RNA-binding domain superfamilyHomologous Superfamily
P [auth Q]IPR001748Pre-mRNA-splicing factor BUD31Family
P [auth Q]IPR018230BUD31/G10-related, conserved siteConserved Site
Q [auth R]IPR006973Pre-mRNA-splicing factor Cwf15/Cwc15Family
R [auth S]IPR047490Serine/arginine repetitive matrix protein 2, cwf21 domainDomain
R [auth S]IPR013170mRNA splicing factor Cwf21 domainDomain
R [auth S]IPR024945Spt5 C-terminal domainDomain
R [auth S]IPR051372Pre-mRNA-splicing factor CWC21Family
S [auth V]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
S [auth V]IPR024936Cyclophilin-type peptidyl-prolyl cis-trans isomeraseFamily
S [auth V]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
S [auth V]IPR044666Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-likeFamily
S [auth V]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
T [auth Y]IPR052225Serine/arginine repetitive matrixFamily
T [auth Y]IPR002483PWI domainDomain
T [auth Y]IPR036483PWI domain superfamilyHomologous Superfamily
V [auth s]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
V [auth s]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
V [auth s]IPR044666Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-likeFamily
V [auth s]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
W [auth t]IPR017907Zinc finger, RING-type, conserved siteConserved Site
W [auth t]IPR000571Zinc finger, CCCH-typeDomain
W [auth t]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
W [auth t]IPR036855Zinc finger, CCCH-type superfamilyHomologous Superfamily
W [auth t]IPR001841Zinc finger, RING-typeDomain
W [auth t]IPR039971Pre-mRNA-splicing factor CWC24-likeFamily
X [auth u]IPR016024Armadillo-type foldHomologous Superfamily
X [auth u]IPR011989Armadillo-like helicalHomologous Superfamily
X [auth u]IPR015016Splicing factor 3B subunit 1Domain
X [auth u]IPR038737Splicing factor 3B subunit 1-likeFamily
Y [auth v]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Y [auth v]IPR018846Cleavage/polyadenylation specificity factor, A subunit, N-terminalDomain
Y [auth v]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Y [auth v]IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalDomain
Y [auth v]IPR050358RSE1/DDB1/CFT1/CPSF1Family
Z [auth x]IPR017089Splicing factor 3B, subunit 5Family
Z [auth x]IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10Family
AA [auth y]IPR005345PHF5-likeFamily
BA [auth z]IPR000504RNA recognition motif domainDomain
BA [auth z]IPR050374RRT5/SRSF/Splicing Factor SRFamily
BA [auth z]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
BA [auth z]IPR034150SF3B6, RNA recognition motifDomain
BA [auth z]IPR035979RNA-binding domain superfamilyHomologous Superfamily
C [auth 3]IPR051112Pre-mRNA-splicing factor CWC26Family
C [auth 3]IPR018609Bud13Family
F [auth 7]IPR031781SF3A2 domainDomain
F [auth 7]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
F [auth 7]IPR013087Zinc finger C2H2-typeDomain
F [auth 7]IPR052092Splicing Factor 3A Subunit 2Family
F [auth 7]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
F [auth 7]IPR000690Matrin/U1-C, C2H2-type zinc fingerDomain
G [auth 8]IPR006568PSP, proline-richDomain
G [auth 8]IPR007180Domain of unknown function DUF382Domain
G [auth 8]IPR003034SAP domainDomain
G [auth 8]IPR052584Pre-mRNA Spliceosomal U2 snRNP Complex ComponentFamily
H [auth A]IPR012984PROCT domainDomain
H [auth A]IPR012591PRO8NT domainDomain
H [auth A]IPR019580Pre-mRNA-processing-splicing factor 8, U6-snRNA-bindingDomain
H [auth A]IPR027652Pre-mRNA-processing-splicing factor 8Family
H [auth A]IPR043172Prp8 RNase domain IV, palm regionHomologous Superfamily
H [auth A]IPR012592PROCN domainDomain
H [auth A]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
H [auth A]IPR043173Prp8 RNase domain IV, fingers regionHomologous Superfamily
H [auth A]IPR021983PRP8 domain IV coreDomain
H [auth A]IPR019581Pre-mRNA-processing-splicing factor 8, U5-snRNA-bindingDomain
H [auth A]IPR037518MPN domainDomain
H [auth A]IPR019582RNA recognition motif, spliceosomal PrP8Domain
H [auth A]IPR042516Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyHomologous Superfamily
H [auth A]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
I [auth B]IPR005517Translation elongation factor EFG/EF2, domain IVDomain
I [auth B]IPR000795Translational (tr)-type GTP-binding domainDomain
I [auth B]IPR035647EF-G domain III/V-likeHomologous Superfamily
I [auth B]IPR035655116kDa U5 small nuclear ribonucleoprotein component, C-terminalDomain
I [auth B]IPR041095Elongation Factor G, domain IIDomain
I [auth B]IPR004161Translation elongation factor EFTu-like, domain 2Domain
I [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
I [auth B]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth B]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
I [auth B]IPR031950116kDa U5 small nuclear ribonucleoprotein component, N-terminalDomain
I [auth B]IPR005225Small GTP-binding domainDomain
I [auth B]IPR000640Elongation factor EFG, domain V-likeDomain
I [auth B]IPR044121Snu114, GTP-binding domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
J [auth C]PharosQ13573
K [auth D]PharosO43660
L [auth E]PharosO60508
M [auth L]PharosQ99459
N [auth O]PharosQ9BZJ0
O [auth P]PharosQ9NW64
P [auth Q]PharosP41223
Q [auth R]PharosQ9P013
R [auth S]PharosQ9UQ35
S [auth V]PharosQ9Y3C6
T [auth Y]PharosQ8IYB3
V [auth s]PharosQ6UX04
W [auth t]PharosO15541
X [auth u]PharosO75533
Y [auth v]PharosQ15393
Z [auth x]PharosQ9BWJ5
AA [auth y]PharosQ7RTV0
BA [auth z]PharosQ9Y3B4
C [auth 3]PharosQ9BRD0
F [auth 7]PharosQ15428
G [auth 8]PharosQ13435
H [auth A]PharosQ6P2Q9
I [auth B]PharosQ15029