Crystal structure of E. coli DExH-box NTPase HrpB
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UNK_F_TYPE | e6eudA5 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: UNK_F_TYPE | ECOD (1.6) |
A | UNK_F_TYPE | e6eudA6 | A: beta meanders | X: WW domain-like | H: Connector region of RNA helicase HrpB (From Topology) | T: Connector region of RNA helicase HrpB | F: UNK_F_TYPE | ECOD (1.6) |
A | HA2_N | e6eudA3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HA2_N | ECOD (1.6) |
A | UNK_F_TYPE | e6eudA4 | A: alpha arrays | X: Sec63 N-terminal subdomain-like (From Topology) | H: Sec63 N-terminal subdomain-like (From Topology) | T: Sec63 N-terminal subdomain-like | F: UNK_F_TYPE | ECOD (1.6) |
A | UNK_F_TYPE | e6eudA7 | A: a+b complex topology | X: C-terminal domain of RNA helicase HrpB (From Topology) | H: C-terminal domain of RNA helicase HrpB (From Topology) | T: C-terminal domain of RNA helicase HrpB | F: UNK_F_TYPE | ECOD (1.6) |
A | Helicase_C_7 | e6eudA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_7 | ECOD (1.6) |
A | DEAD_3 | e6eudA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08482 | ATP-dependent helicase C-terminal (HrpB_C) | ATP-dependent helicase C-terminal | - | Family | |
PF00270 | DEAD/DEAH box helicase (DEAD) | DEAD/DEAH box helicase | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ... | Domain | |
PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
ATP-dependent RNA helicase HrpB |
| - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR010225 | ATP-dependent helicase HrpB | Family | |
IPR007502 | Helicase-associated domain | Domain | |
IPR049614 | HrpB, DEXH-box helicase domain | Domain | |
IPR013689 | ATP-dependent RNA helicase HrpB, C-terminal | Domain | |
IPR011545 | DEAD/DEAH box helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |