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 6EMK | pdb_00006emk

Cryo-EM Structure of Saccharomyces cerevisiae Target of Rapamycin Complex 2

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyAnkyrin repeat 8082138 3000154 SCOP2B (2022-06-29)
GSCOP2 FamilyAnkyrin repeat 8082137 4000366 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyAnkyrin repeat 8082138 3000154 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IGlyco_hydro_28e6emkI1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: Undecaprenyl diphosphate synthaseF: Glyco_hydro_28ECOD (v295.2)
JPriXe6emkJ1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
HPriXe6emkH1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
GGlyco_hydro_28e6emkG1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: Undecaprenyl diphosphate synthaseF: Glyco_hydro_28ECOD (v295.2)
DPriXe6emkD1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF: PriXECOD (v295.2)
BGlyco_hydro_28e6emkB1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: Undecaprenyl diphosphate synthaseF: Glyco_hydro_28ECOD (v295.2)
CAAA_lid_3e6emkC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)
Ae6emkA1 A: alpha arraysX: Cryptochrome/photolyase FAD-binding domain-relatedH: Cryptochrome/photolyase FAD-binding domain-relatedT: PriXF:ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G, H
PF00023Ankyrin repeat (Ank)Ankyrin repeat- Repeat
B, D
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
A, C
PF02260FATC domain (FATC)FATC domain- Family
A, C
PF23593Serine/threonine-protein kinase ATR-like, HEAT repeats (HEAT_ATR)Serine/threonine-protein kinase ATR-like, HEAT repeats- Repeat
A, C
PF08771FKBP12-rapamycin binding domain (FRB_dom)FKBP12-rapamycin binding domainThe macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapa ...The macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapamycin binding domain (FRB) of the TOR proteins. This entry represents the FRB domain [1, 2].
Domain
A, C
PF00454Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase)Phosphatidylinositol 3- and 4-kinase- Family
A, C
PF11865Serine/threonine-protein kinase mTOR domain (mTOR_dom)Serine/threonine-protein kinase mTOR domain- Repeat
A, C
PF02259FAT domain (FAT)FAT domain- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I, J
Target of rapamycin complex 2 subunit AVO1
G, H
Target of rapamycin complex 2 subunit AVO2-
E, F
Target of rapamycin complex 2 subunit TSC11---
B, D
Target of rapamycin complex subunit LST8
A, C
Serine/threonine-protein kinase TOR2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I, J
IPR031313SAPK-interacting protein 1, Pleckstrin-homology domainDomain
I, J
IPR011993PH-like domain superfamilyHomologous Superfamily
I, J
IPR031567Sin1, middle CRIM domainDomain
I, J
IPR056385AVO1/Sin1, ubiquitin-like domainDomain
I, J
IPR008828TORC2 component Sin1/Avo1Family
G, H
IPR002110Ankyrin repeatRepeat
G, H
IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily
B, D
IPR019775WD40 repeat, conserved siteConserved Site
B, D
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
B, D
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
B, D
IPR001680WD40 repeatRepeat
B, D
IPR037588Target of rapamycin complex subunit LST8Family
B, D
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A, C
IPR026683Serine/threonine-protein kinase TOR, catalytic domainDomain
A, C
IPR016024Armadillo-type foldHomologous Superfamily
A, C
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
A, C
IPR003152FATC domainDomain
A, C
IPR024585Serine/threonine-protein kinase mTOR domainDomain
A, C
IPR011989Armadillo-like helicalHomologous Superfamily
A, C
IPR009076FKBP12-rapamycin binding domainDomain
A, C
IPR000403Phosphatidylinositol 3-/4-kinase, catalytic domainDomain
A, C
IPR050517DNA Damage Response and Repair KinaseFamily
A, C
IPR003151PIK-related kinase, FATDomain
A, C
IPR018936Phosphatidylinositol 3-/4-kinase, conserved siteConserved Site
A, C
IPR036940Phosphatidylinositol 3-/4-kinase, catalytic domain superfamilyHomologous Superfamily
A, C
IPR057564Serine/threonine-protein kinase ATR-like, HEAT repeatsDomain
A, C
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A, C
IPR036738FKBP12-rapamycin binding domain superfamilyHomologous Superfamily
A, C
IPR014009PIK-related kinase, FAT domainDomain