6EK5

Near-atomic resolution structure of a plant geminivirus determined by electron cryo-microscopy.

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], B, BA [auth BB], BB [auth 1], BC [auth Be], BD [auth Bv], C, CA [auth BC], CB [auth 2], CC [auth Bf], CD [auth BI], D, DA [auth BD], DB [auth k], DC [auth Bg], DD [auth BR], E, EA [auth a], EB [auth w], EC [auth Bh], ED [auth BW], F, FA [auth b], FB [auth l], FC [auth Bi], FD [auth Bl], G, GA [auth c], GB [auth v], GC [auth Bj], H, HA [auth d], HB [auth BE], HC [auth Bm], I, IA [auth e], IB [auth BF], IC [auth Bn], J, JA [auth f], JB [auth BG], JC [auth Bo], K, KA [auth g], KB [auth BJ], KC [auth Bp], L, LA [auth h], LB [auth BP], LC [auth Bq], M, MA [auth i], MB [auth BS], MC [auth Br], N, NA [auth j], NB [auth BT], NC [auth Bs], O, OA [auth m], OB [auth BU], OC [auth Bt], P, PA [auth n], PB [auth BX], PC [auth Bu], Q, QA [auth o], QB [auth BY], QC [auth Bx], R, RA [auth p], RB [auth BZ], RC [auth By], S, SA [auth q], SB [auth Ba], SC [auth Bz], T, TA [auth r], TB [auth Bb], TC [auth B3], U, UA [auth s], UB [auth Bc], UC [auth B1], V, VA [auth t], VB [auth Bd], VC [auth B2], W, WA [auth u], WB [auth BK], WC [auth Bw], X, XA [auth x], XB [auth BL], XC [auth BH], Y, YA [auth y], YB [auth BM], YC [auth BQ], Z, ZA [auth z], ZB [auth BN], ZC [auth BV]	PF00844	Geminivirus coat protein/nuclear export factor BR1 family (Gemini_coat)	Geminivirus coat protein/nuclear export factor BR1 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], B, BA [auth BB], BB [auth 1], BC [auth Be], BD [auth Bv], C, CA [auth BC], CB [auth 2], CC [auth Bf], CD [auth BI], D, DA [auth BD], DB [auth k], DC [auth Bg], DD [auth BR], E, EA [auth a], EB [auth w], EC [auth Bh], ED [auth BW], F, FA [auth b], FB [auth l], FC [auth Bi], FD [auth Bl], G, GA [auth c], GB [auth v], GC [auth Bj], H, HA [auth d], HB [auth BE], HC [auth Bm], I, IA [auth e], IB [auth BF], IC [auth Bn], J, JA [auth f], JB [auth BG], JC [auth Bo], K, KA [auth g], KB [auth BJ], KC [auth Bp], L, LA [auth h], LB [auth BP], LC [auth Bq], M, MA [auth i], MB [auth BS], MC [auth Br], N, NA [auth j], NB [auth BT], NC [auth Bs], O, OA [auth m], OB [auth BU], OC [auth Bt], P, PA [auth n], PB [auth BX], PC [auth Bu], Q, QA [auth o], QB [auth BY], QC [auth Bx], R, RA [auth p], RB [auth BZ], RC [auth By], S, SA [auth q], SB [auth Ba], SC [auth Bz], T, TA [auth r], TB [auth Bb], TC [auth B3], U, UA [auth s], UB [auth Bc], UC [auth B1], V, VA [auth t], VB [auth Bd], VC [auth B2], W, WA [auth u], WB [auth BK], WC [auth Bw], X, XA [auth x], XB [auth BL], XC [auth BH], Y, YA [auth y], YB [auth BM], YC [auth BQ], Z, ZA [auth z], ZB [auth BN], ZC [auth BV]	Capsid protein	DNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity cation binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction viral penetration into host nucleus intracellular transport of virus transport of virus	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], B, BA [auth BB], BB [auth 1], BC [auth Be], BD [auth Bv], C, CA [auth BC], CB [auth 2], CC [auth Bf], CD [auth BI], D, DA [auth BD], DB [auth k], DC [auth Bg], DD [auth BR], E, EA [auth a], EB [auth w], EC [auth Bh], ED [auth BW], F, FA [auth b], FB [auth l], FC [auth Bi], FD [auth Bl], G, GA [auth c], GB [auth v], GC [auth Bj], H, HA [auth d], HB [auth BE], HC [auth Bm], I, IA [auth e], IB [auth BF], IC [auth Bn], J, JA [auth f], JB [auth BG], JC [auth Bo], K, KA [auth g], KB [auth BJ], KC [auth Bp], L, LA [auth h], LB [auth BP], LC [auth Bq], M, MA [auth i], MB [auth BS], MC [auth Br], N, NA [auth j], NB [auth BT], NC [auth Bs], O, OA [auth m], OB [auth BU], OC [auth Bt], P, PA [auth n], PB [auth BX], PC [auth Bu], Q, QA [auth o], QB [auth BY], QC [auth Bx], R, RA [auth p], RB [auth BZ], RC [auth By], S, SA [auth q], SB [auth Ba], SC [auth Bz], T, TA [auth r], TB [auth Bb], TC [auth B3], U, UA [auth s], UB [auth Bc], UC [auth B1], V, VA [auth t], VB [auth Bd], VC [auth B2], W, WA [auth u], WB [auth BK], WC [auth Bw], X, XA [auth x], XB [auth BL], XC [auth BH], Y, YA [auth y], YB [auth BM], YC [auth BQ], Z, ZA [auth z], ZB [auth BN], ZC [auth BV]	IPR000263	Geminivirus AR1/BR1 coat protein	Family
A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], B, BA [auth BB], BB [auth 1], BC [auth Be], BD [auth Bv], C, CA [auth BC], CB [auth 2], CC [auth Bf], CD [auth BI], D, DA [auth BD], DB [auth k], DC [auth Bg], DD [auth BR], E, EA [auth a], EB [auth w], EC [auth Bh], ED [auth BW], F, FA [auth b], FB [auth l], FC [auth Bi], FD [auth Bl], G, GA [auth c], GB [auth v], GC [auth Bj], H, HA [auth d], HB [auth BE], HC [auth Bm], I, IA [auth e], IB [auth BF], IC [auth Bn], J, JA [auth f], JB [auth BG], JC [auth Bo], K, KA [auth g], KB [auth BJ], KC [auth Bp], L, LA [auth h], LB [auth BP], LC [auth Bq], M, MA [auth i], MB [auth BS], MC [auth Br], N, NA [auth j], NB [auth BT], NC [auth Bs], O, OA [auth m], OB [auth BU], OC [auth Bt], P, PA [auth n], PB [auth BX], PC [auth Bu], Q, QA [auth o], QB [auth BY], QC [auth Bx], R, RA [auth p], RB [auth BZ], RC [auth By], S, SA [auth q], SB [auth Ba], SC [auth Bz], T, TA [auth r], TB [auth Bb], TC [auth B3], U, UA [auth s], UB [auth Bc], UC [auth B1], V, VA [auth t], VB [auth Bd], VC [auth B2], W, WA [auth u], WB [auth BK], WC [auth Bw], X, XA [auth x], XB [auth BL], XC [auth BH], Y, YA [auth y], YB [auth BM], YC [auth BQ], Z, ZA [auth z], ZB [auth BN], ZC [auth BV]	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], B, BA [auth BB], BB [auth 1], BC [auth Be], BD [auth Bv], C, CA [auth BC], CB [auth 2], CC [auth Bf], CD [auth BI], D, DA [auth BD], DB [auth k], DC [auth Bg], DD [auth BR], E, EA [auth a], EB [auth w], EC [auth Bh], ED [auth BW], F, FA [auth b], FB [auth l], FC [auth Bi], FD [auth Bl], G, GA [auth c], GB [auth v], GC [auth Bj], H, HA [auth d], HB [auth BE], HC [auth Bm], I, IA [auth e], IB [auth BF], IC [auth Bn], J, JA [auth f], JB [auth BG], JC [auth Bo], K, KA [auth g], KB [auth BJ], KC [auth Bp], L, LA [auth h], LB [auth BP], LC [auth Bq], M, MA [auth i], MB [auth BS], MC [auth Br], N, NA [auth j], NB [auth BT], NC [auth Bs], O, OA [auth m], OB [auth BU], OC [auth Bt], P, PA [auth n], PB [auth BX], PC [auth Bu], Q, QA [auth o], QB [auth BY], QC [auth Bx], R, RA [auth p], RB [auth BZ], RC [auth By], S, SA [auth q], SB [auth Ba], SC [auth Bz], T, TA [auth r], TB [auth Bb], TC [auth B3], U, UA [auth s], UB [auth Bc], UC [auth B1], V, VA [auth t], VB [auth Bd], VC [auth B2], W, WA [auth u], WB [auth BK], WC [auth Bw], X, XA [auth x], XB [auth BL], XC [auth BH], Y, YA [auth y], YB [auth BM], YC [auth BQ], Z, ZA [auth z], ZB [auth BN], ZC [auth BV]	IPR000650	Geminivirus AR1 coat protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.