Annotations: 6E11

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth 1]	ClpB_D2-small	e6e1114	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
D [auth 1]	chaperone_ClpB	e6e1112	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: chaperone_ClpB	ECOD (1.6)
D [auth 1]	Sigma54_activat	e6e1111	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
E [auth 2]	ClpB_D2-small	e6e1122	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
E [auth 2]	chaperone_ClpB	e6e1123	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: chaperone_ClpB	ECOD (1.6)
E [auth 2]	Sigma54_activat	e6e1124	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
F [auth 3]	ClpB_D2-small	e6e1134	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
F [auth 3]	chaperone_ClpB	e6e1133	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: chaperone_ClpB	ECOD (1.6)
F [auth 3]	Sigma54_activat	e6e1131	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
G [auth 4]	ClpB_D2-small	e6e1141	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
G [auth 4]	chaperone_ClpB	e6e1144	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: chaperone_ClpB	ECOD (1.6)
G [auth 4]	Sigma54_activat	e6e1142	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
H [auth 5]	ClpB_D2-small	e6e1153	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
H [auth 5]	chaperone_ClpB	e6e1151	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: chaperone_ClpB	ECOD (1.6)
H [auth 5]	Sigma54_activat	e6e1154	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
J [auth 6]	ClpB_D2-small	e6e1163	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: ClpB_D2-small	ECOD (1.6)
J [auth 6]	chaperone_ClpB	e6e1162	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: chaperone_ClpB	ECOD (1.6)
J [auth 6]	Sigma54_activat	e6e1161	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	PF10431	C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)	C-terminal, D2-small domain, of ClpB protein	This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 ...	This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly [1]. The domain is associated with two Clp_N, Pfam:PF02861, at the N-terminus as well as AAA, Pfam:PF00004 and AAA_2, Pfam:PF07724.	Domain
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	PF17871	AAA lid domain (AAA_lid_9)	AAA lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	PF07724	AAA domain (Cdc48 subfamily) (AAA_2)	AAA domain (Cdc48 subfamily)	This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth i], AA [auth l], B [auth j], BA [auth m], C [auth k], A [auth i], AA [auth l], B [auth j], BA [auth m], C [auth k], Y [auth n], Z [auth h]	Unknown (Claw)	-	-	-
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	Heat shock protein 101	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	response to stimulus response to topologically incorrect protein response to stress response to unfolded protein cellular response to stimulus cellular response to heat cellular response to stress response to heat response to abiotic stimulus cellular process response to temperature stimulus biological process involved in interspecies interaction between organisms translocation of peptides or proteins into host translocation of molecules into host response to stimulus response to topologically incorrect protein response to stress response to unfolded protein cellular response to stimulus cellular response to heat cellular response to stress response to heat response to abiotic stimulus cellular process response to temperature stimulus biological process involved in interspecies interaction between organisms translocation of peptides or proteins into host translocation of molecules into host biological process involved in interaction with host translocation of peptides or proteins into host cell cytoplasm biological process involved in symbiotic interaction	membrane-bounded organelle host cellular component protein-containing complex host intracellular part extracellular organelle extracellular region symbiont-containing vacuole membrane cellular anatomical entity host cell cytoplasm part PTEX complex symbiont-containing vacuole host cell cytoplasm host cell part organelle membrane-bounded organelle host cellular component protein-containing complex host intracellular part extracellular organelle extracellular region symbiont-containing vacuole membrane cellular anatomical entity host cell cytoplasm part PTEX complex symbiont-containing vacuole host cell cytoplasm host cell part organelle host intracellular region extracellular membrane-bounded organelle apical part of cell apical complex intracellular anatomical structure cytoplasm
I [auth C], K [auth D], M [auth E], Q [auth B], S [auth A], I [auth C], K [auth D], M [auth E], Q [auth B], S [auth A], U [auth G], W [auth F]	Exported protein 2	-	-	membrane-bounded organelle host cellular component protein-containing complex host intracellular part extracellular organelle extracellular region symbiont-containing vacuole membrane cellular anatomical entity host cell cytoplasm part PTEX complex symbiont-containing vacuole host cell cytoplasm host cell part organelle membrane-bounded organelle host cellular component protein-containing complex host intracellular part extracellular organelle extracellular region symbiont-containing vacuole membrane cellular anatomical entity host cell cytoplasm part PTEX complex symbiont-containing vacuole host cell cytoplasm host cell part organelle host intracellular region extracellular membrane-bounded organelle
L [auth 0]	Endogenous cargo polypeptide	-	-	-
N [auth d], O [auth c], P [auth b], R [auth a], T [auth g], N [auth d], O [auth c], P [auth b], R [auth a], T [auth g], V [auth f], X [auth e]	Translocon component PTEX150	-	biological process involved in interspecies interaction between organisms translocation of peptides or proteins into host translocation of molecules into host biological process involved in interaction with host translocation of peptides or proteins into host cell cytoplasm biological process involved in symbiotic interaction	membrane-bounded organelle host cellular component protein-containing complex host intracellular part extracellular organelle extracellular region symbiont-containing vacuole membrane cellular anatomical entity host cell cytoplasm part PTEX complex symbiont-containing vacuole host cell cytoplasm host cell part organelle membrane-bounded organelle host cellular component protein-containing complex host intracellular part extracellular organelle extracellular region symbiont-containing vacuole membrane cellular anatomical entity host cell cytoplasm part PTEX complex symbiont-containing vacuole host cell cytoplasm host cell part organelle host intracellular region extracellular membrane-bounded organelle apical part of cell apical complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	IPR001270	ClpA/B family	Family
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	IPR018368	ClpA/B, conserved site 1	Conserved Site
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	IPR041546	ClpA/ClpB, AAA lid domain	Domain
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	IPR050130	ATP-dependent Clp protease/Chaperone ClpA/ClpB	Family
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	IPR004176	Clp, repeat (R) domain	Domain
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	IPR028299	ClpA/B, conserved site 2	Conserved Site
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	IPR003593	AAA+ ATPase domain	Domain
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	IPR003959	ATPase, AAA-type, core	Domain
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	IPR019489	Clp ATPase, C-terminal	Domain
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	IPR036628	Clp, N-terminal domain superfamily	Homologous Superfamily
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], J [auth 6]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5] D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], I [auth C], J [auth 6], K [auth D], M [auth E], N [auth d], O [auth c], P [auth b], Q [auth B], R [auth a], S [auth A], T [auth g], U [auth G], V [auth f], W [auth F], X [auth e]	OPM				Plasmodium translocon of exported proteins

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5] D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], I [auth C], J [auth 6], K [auth D], M [auth E], N [auth d], O [auth c], P [auth b], Q [auth B], R [auth a], S [auth A], T [auth g], U [auth G], V [auth f], W [auth F], X [auth e]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5] D [auth 1], E [auth 2], F [auth 3], G [auth 4], H [auth 5], I [auth C], J [auth 6], K [auth D], M [auth E], N [auth d], O [auth c], P [auth b], Q [auth B], R [auth a], S [auth A], T [auth g], U [auth G], V [auth f], W [auth F], X [auth e]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Sec, Translocase, and Insertase Proteins	Plasmodium translocon of exported protein (PTEX) Core Complex in the Engaged (Extended) State

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.