Crystal structure of the LigJ Hydratase in the Apo state
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | d6dwvd_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Metallo-dependent hydrolases | automated matches | automated matches | (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], | SCOPe (2.08) |
| C | d6dwvc_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Metallo-dependent hydrolases | automated matches | automated matches | (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], | SCOPe (2.08) |
| B [auth A] | d6dwva_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Metallo-dependent hydrolases | automated matches | automated matches | (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], | SCOPe (2.08) |
| A [auth B] | d6dwvb_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Metallo-dependent hydrolases | automated matches | automated matches | (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| D | SCOP2B Superfamily | Metallo-dependent hydrolases | 8061216 | 3000428 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Metallo-dependent hydrolases | 8061216 | 3000428 | SCOP2B (2022-06-29) |
| B [auth A] | SCOP2B Superfamily | Metallo-dependent hydrolases | 8061216 | 3000428 | SCOP2B (2022-06-29) |
| A [auth B] | SCOP2B Superfamily | Metallo-dependent hydrolases | 8061216 | 3000428 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | OB_NTP_bind | e6dwvD1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| C | OB_NTP_bind | e6dwvC1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| B [auth A] | OB_NTP_bind | e6dwvA1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| A [auth B] | Bcl-2 | e6dwvB1 | A: alpha arrays | X: fingers domain in bacteriophage RB69-like DNA polymerase I | H: fingers domain in bacteriophage RB69-like DNA polymerase I | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: Bcl-2 | ECOD (v295.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth B], B [auth A], C, D | PF04909 | Amidohydrolase (Amidohydro_2) | Amidohydrolase | These proteins are amidohydrolases that are related to Pfam:PF01979 [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| A [auth B], B [auth A], C, D | 4-oxalomesaconate hydratase |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth B], B [auth A], C, D | IPR032465 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase | Family |
| A [auth B], B [auth A], C, D | IPR006680 | Amidohydrolase-related | Domain |
| A [auth B], B [auth A], C, D | IPR032466 | Metal-dependent hydrolase | Homologous Superfamily |