6DBQ
Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS substrate DNAs
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF12940 | e6dbqA3 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF12940 | ECOD (1.6) |
A | PF12940 | e6dbqA2 | A: alpha bundles | X: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | H: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | T: V(D)J recombination-activating protein 1 helical bundle domain | F: PF12940 | ECOD (1.6) |
A | PF12940 | e6dbqA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF12940 | ECOD (1.6) |
C | PF12940 | e6dbqC3 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF12940 | ECOD (1.6) |
C | PF12940 | e6dbqC1 | A: alpha bundles | X: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | H: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | T: V(D)J recombination-activating protein 1 helical bundle domain | F: PF12940 | ECOD (1.6) |
C | PF12940 | e6dbqC2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF12940 | ECOD (1.6) |
B | PF03089 | e6dbqB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF03089 | ECOD (1.6) |
D | PF03089 | e6dbqD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF03089 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03089 | Recombination activating protein 2 (RAG2) | Recombination activating protein 2 | - | Repeat | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006061 | Solute-binding family 1, conserved site | Conserved Site | |
IPR006060 | Maltose/Cyclodextrin ABC transporter, substrate-binding protein | Family | |
IPR006059 | Bacterial-type extracellular solute-binding protein | Family | |
IPR024627 | V(D)J recombination-activating protein 1 | Family | |
IPR019485 | V(D)J recombination-activating protein 1, Zinc finger | Domain | |
IPR023336 | RAG nonamer-binding domain | Domain | |
IPR018957 | Zinc finger, C3HC4 RING-type | Domain | |
IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR035714 | RAG1 importin-binding | Domain | |
IPR001841 | Zinc finger, RING-type | Domain | |
IPR015915 | Kelch-type beta propeller | Homologous Superfamily | |
IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily | |
IPR011043 | Galactose oxidase/kelch, beta-propeller | Homologous Superfamily | |
IPR025162 | Recombination activating protein 2, PHD domain | Domain | |
IPR004321 | V-D-J recombination activating protein 2 | Family |