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 6DAW | pdb_00006daw

X-ray crystal structure of NapI L-arginine desaturase bound to Fe(II), L-arginine, and acetate

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyClavaminate synthase 8084410 4002877 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyClavaminate synthase-like 8084411 3001848 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyClavaminate synthase-like 8084411 3001848 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APylS_Ne6dawA1 A: alpha arraysX: OB-foldH: Nucleic acid-binding proteinT: NucleotidyltransferaseF: PylS_NECOD (v295.2)
BVP4_haemagglute6dawB1 A: alpha arraysX: OB-foldH: Nucleic acid-binding proteinT: NucleotidyltransferaseF: VP4_haemagglutECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-likeCATH (4.3.0)
B3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-likeCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Non-heme iron hydroxylase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR003819TauD/TfdA-like domainDomain
A, B
IPR014503Clavaminate synthase-likeFamily
A, B
IPR053447Alpha-ketoglutarate-dependent hydroxylaseFamily
A, B
IPR042098Glutarate 2-hydroxylase superfamilyHomologous Superfamily